genome.fa.s218.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold218
Parameters: 2 7 7 80 10 50 1000
Length:  193631

Tables:   1   2   

This is table  1  of  2  ( 145 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
258--315	25	2.4	25	80	13	59	37	5	0	56	1.21
977--1006	15	2.1	15	93	6	53	40	6	0	53	1.27
3248--3291	13	3.5	13	81	3	54	45	2	2	50	1.27
3280--3322	17	2.5	17	85	7	61	55	0	0	44	0.99
4761--4789	14	2.0	15	93	6	51	62	0	6	31	1.22
5077--5138	17	3.7	19	70	27	59	45	0	0	54	0.99
5074--5138	32	2.0	33	90	3	105	46	0	0	53	1.00
5064--5131	16	4.2	17	74	20	65	44	0	0	55	0.99
5081--5156	32	2.4	31	80	6	89	46	0	1	52	1.08
9312--9345	6	6.0	6	86	13	54	85	14	0	0	0.60
9312--9345	11	3.0	12	87	12	54	85	14	0	0	0.60
9314--9345	16	1.9	17	93	6	57	87	12	0	0	0.54
9313--9347	10	3.3	10	92	8	52	88	11	0	0	0.51
11114--11155	22	1.9	22	90	9	68	61	0	0	38	0.96
11238--11275	18	2.1	18	100	0	76	44	15	10	28	1.80
12052--12088	14	2.4	16	82	17	51	51	0	0	48	1.00
12131--12176	6	7.5	6	81	13	58	56	0	0	43	0.99
12348--12402	27	2.0	28	82	10	69	29	1	3	65	1.20
12700--12739	21	1.9	21	85	10	55	62	0	0	37	0.95
16414--16532	62	1.9	62	86	3	168	46	5	5	42	1.50
16609--16679	23	3.2	22	82	7	67	60	2	2	33	1.26
16631--16681	23	2.3	23	89	3	77	60	3	3	31	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17242--17280	2	20.0	2	94	5	71	51	0	0	48	1.00
17767--17835	26	2.8	24	77	16	70	44	2	0	52	1.16
17783--17819	7	5.6	7	81	12	51	45	0	0	54	1.00
17839--17883	22	2.0	23	86	4	65	40	2	0	57	1.11
19015--19052	11	3.5	11	82	7	51	2	13	0	84	0.73
22606--22638	3	11.0	3	100	0	66	66	33	0	0	0.92
27999--28057	31	1.9	31	83	10	77	50	0	1	47	1.11
28062--28133	25	3.0	23	73	15	65	44	1	0	54	1.08
28138--28167	13	2.3	13	94	0	51	56	0	3	40	1.16
28139--28208	18	4.5	15	75	19	63	57	0	1	41	1.08
28096--28219	49	2.6	49	72	13	121	52	0	2	44	1.19
28548--28605	16	3.6	16	73	2	53	39	0	0	60	0.97
28546--28607	30	2.0	32	84	6	83	37	0	0	62	0.95
29160--29192	17	1.9	17	93	0	57	30	18	6	45	1.73
29165--29199	17	2.1	17	88	0	52	37	14	2	45	1.59
29645--29678	11	3.1	11	91	8	52	70	0	2	26	1.01
30463--30571	53	2.1	53	81	8	125	45	0	4	49	1.22
31145--31230	25	3.3	25	76	14	77	44	1	1	53	1.15
31635--31699	29	2.2	29	91	0	103	41	4	3	50	1.38
35812--35857	13	2.9	17	72	27	55	56	0	0	43	0.99
36722--36762	22	1.9	21	90	5	64	60	0	0	39	0.96
37555--37595	21	1.9	22	85	5	57	12	4	9	73	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37918--38244	167	2.0	166	88	1	485	28	16	15	39	1.89
38327--39322	341	3.0	335	86	3	1358	26	16	15	41	1.88
38327--39323	170	5.9	167	89	2	1297	26	16	15	41	1.88
41122--41636	170	3.1	166	87	6	677	25	15	17	42	1.88
41501--41762	130	2.0	130	92	1	436	24	13	18	43	1.86
41638--42017	165	2.3	165	85	1	492	26	17	15	40	1.89
45004--45061	29	2.0	29	96	0	107	39	8	24	27	1.84
45092--45122	16	1.9	16	100	0	62	45	9	0	45	1.36
48522--48859	170	2.0	170	83	5	423	42	16	18	23	1.89
49793--49834	22	2.0	21	85	4	57	40	0	2	57	1.12
49848--49914	26	2.7	25	74	19	68	55	0	0	44	0.99
49846--49915	23	2.8	26	70	27	62	55	0	0	44	0.99
50948--50986	18	2.2	17	86	13	53	69	0	5	25	1.09
53698--53722	3	8.3	3	100	0	50	68	0	32	0	0.90
56241--56306	33	2.0	33	96	0	123	10	27	33	28	1.90
57736--57767	3	10.7	3	100	0	64	31	0	0	68	0.90
63059--63097	3	13.0	3	100	0	78	33	0	0	66	0.92
63665--63735	37	1.9	37	85	0	97	35	30	16	16	1.92
73347--73479	69	1.9	69	84	3	178	42	8	8	40	1.65
73655--73692	2	19.0	2	91	0	58	52	0	2	44	1.14
80951--81301	142	2.5	138	81	5	350	37	9	8	44	1.67
80994--81301	138	2.2	142	83	4	383	38	9	7	44	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84729--84858	50	2.6	50	86	1	179	25	24	13	36	1.91
84793--85155	79	4.6	79	80	9	350	26	25	13	33	1.94
84793--85166	157	2.4	156	80	6	414	27	25	14	33	1.94
95035--95083	3	16.3	3	100	0	98	67	0	32	0	0.91
106013--106056	20	2.2	20	92	8	72	40	0	0	59	0.98
106013--106068	20	2.8	21	81	10	64	42	0	0	57	0.99
106072--106110	20	2.0	20	90	10	62	58	0	2	38	1.12
106714--106754	3	13.7	3	100	0	82	31	0	0	68	0.90
106775--106880	33	3.0	34	76	12	124	33	6	16	44	1.73
106811--106872	19	3.3	19	90	0	97	32	8	12	46	1.71
107307--107348	21	2.0	20	86	4	57	61	2	2	33	1.21
107750--107801	16	3.2	16	72	17	54	46	1	0	51	1.12
111720--111751	3	10.7	3	100	0	64	68	0	0	31	0.90
123554--123590	18	2.1	18	89	0	56	40	0	5	54	1.24
123834--123906	28	2.6	28	77	14	78	35	2	8	53	1.45
124023--124074	21	2.4	22	90	3	79	46	25	1	26	1.63
124112--124146	18	1.9	18	88	0	52	34	8	5	51	1.56
124184--124238	27	2.1	27	86	10	78	50	1	0	47	1.11
124197--124236	21	1.9	21	94	0	71	52	0	0	47	1.00
124864--124897	8	4.4	8	88	7	52	55	0	0	44	0.99
125376--125453	39	2.0	38	80	14	88	46	1	1	51	1.17
125852--125906	20	3.1	18	78	16	53	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130138--130189	27	2.0	28	85	11	74	42	0	0	57	0.98
131128--131214	2	44.5	2	84	8	72	52	5	1	40	1.33
131947--131990	22	2.0	23	86	13	65	61	0	0	38	0.96
132170--132196	6	4.5	6	100	0	54	62	0	0	37	0.95
135537--135570	16	2.1	17	88	5	52	29	0	0	70	0.87
135653--135685	2	16.5	2	100	0	66	51	0	0	48	1.00
142886--142934	22	2.3	20	83	16	64	40	0	0	59	0.98
143630--143663	14	2.4	14	100	0	68	79	0	11	8	0.94
144187--144259	33	2.2	34	82	7	87	53	0	2	43	1.15
144177--144254	28	2.8	28	81	14	81	50	0	2	47	1.15
144242--144298	12	5.2	12	79	16	52	45	0	1	52	1.11
144762--144789	6	4.7	6	100	0	56	0	50	0	50	1.00
148580--148626	22	2.3	20	79	13	51	48	4	0	46	1.21
149589--149631	19	2.3	18	84	4	50	27	2	2	67	1.15
150202--150246	13	3.2	14	84	9	56	60	0	0	40	0.97
150238--150277	20	2.1	19	86	9	55	40	0	2	57	1.12
150269--150358	9	10.3	9	66	23	50	34	5	0	60	1.20
150848--150876	2	14.5	2	100	0	58	51	0	0	48	1.00
155650--155731	17	5.6	15	71	26	61	42	1	0	56	1.07
155650--155698	15	3.2	16	81	16	59	42	0	0	57	0.99
155643--155718	31	2.5	30	76	21	86	42	0	0	57	0.98
155671--155725	24	2.2	26	87	9	78	43	1	0	54	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156066--156105	19	2.2	18	86	13	55	62	0	0	37	0.95
156066--156106	21	2.1	19	86	9	55	60	0	0	39	0.96
156364--156448	28	2.9	28	74	11	82	45	0	0	54	1.00
156399--156458	19	3.0	22	69	18	58	56	0	0	43	0.99
160696--160967	35	7.8	35	94	2	476	43	5	31	19	1.75
160719--160781	21	3.3	21	67	28	68	42	6	31	19	1.76
160696--160967	139	2.0	140	94	2	476	43	5	31	19	1.75
162366--162630	79	3.4	79	89	0	386	26	25	15	32	1.95
162569--162685	51	2.3	51	89	0	180	31	29	10	28	1.90
162524--162767	130	1.9	127	84	4	328	29	26	12	31	1.93

Tables:   1   2