genome.fa.s2216.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2216
Parameters: 2 7 7 80 10 50 1000
Length:  158421

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5402--5439	13	2.9	13	92	0	58	31	13	18	36	1.89
5818--5862	20	2.1	22	88	8	67	24	48	22	4	1.68
7232--7275	21	2.0	21	82	4	52	36	4	27	31	1.77
7956--7981	13	2.0	13	100	0	52	38	15	15	30	1.88
7938--8001	33	2.0	32	90	3	101	39	20	14	26	1.90
8679--12813	475	8.8	476	80	5	4388	31	18	13	36	1.90
12769--12859	46	2.0	46	88	0	137	34	14	12	39	1.83
13688--15354	475	3.5	474	79	7	1605	31	18	13	35	1.90
15310--15400	46	2.0	46	91	0	146	34	15	12	38	1.84
15356--22434	475	15.1	475	76	7	5920	31	18	13	36	1.90
24450--26833	476	5.0	475	81	4	2503	32	17	13	36	1.89
28454--28521	33	2.1	32	88	2	100	32	11	19	36	1.88
28602--28626	13	1.9	13	100	0	50	36	16	16	32	1.90
33178--33208	15	2.1	15	93	0	53	12	22	16	48	1.80
37272--37297	13	2.0	13	100	0	52	30	15	15	38	1.88
39253--43034	475	8.0	473	84	4	4465	31	18	13	36	1.90
41859--43363	159	9.5	157	66	12	434	31	18	13	36	1.90
41716--42726	159	6.4	162	68	14	435	31	18	13	36	1.90
42664--43334	317	2.1	316	84	3	850	31	18	12	37	1.89
42188--43800	792	2.0	793	85	3	2183	31	18	13	36	1.89
45903--50074	474	8.8	474	80	6	4030	31	18	14	36	1.90
48047--48084	19	2.0	19	94	0	67	39	31	0	28	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48875--49611	159	4.6	159	67	11	423	29	18	14	36	1.91
47222--50073	476	6.0	476	81	6	2970	30	18	14	36	1.90
50071--54373	474	9.1	475	82	4	4695	31	18	14	35	1.90
55150--55175	13	2.0	13	100	0	52	30	15	15	38	1.88
55130--55193	33	2.0	33	90	3	103	26	14	17	42	1.87
57632--57670	13	3.0	13	96	0	69	35	15	17	30	1.91
64535--64657	42	2.9	42	75	7	133	45	2	42	9	1.50
72895--73013	42	2.8	42	90	0	184	8	47	2	42	1.47
72928--73003	12	6.9	11	75	15	52	9	50	2	38	1.49
72910--72979	18	3.6	18	68	20	50	10	44	2	42	1.52
73755--73797	21	2.1	21	86	4	61	4	18	4	72	1.20
73920--75339	718	2.0	718	99	0	2777	33	23	15	27	1.95
77740--77803	33	2.0	33	87	3	94	28	14	15	42	1.86
78427--78467	20	2.0	22	90	9	68	34	26	2	36	1.70
80169--80215	21	2.3	20	78	10	51	42	4	19	34	1.70
80337--80375	13	3.0	13	96	0	69	35	15	17	30	1.91
80362--80440	20	3.7	20	73	18	68	40	13	16	29	1.87
87556--96437	476	18.8	476	81	4	9687	31	17	13	36	1.90
95649--96310	158	4.2	156	66	17	369	30	18	13	37	1.90
100812--100930	42	2.8	42	92	0	193	8	46	2	42	1.47
100845--100920	12	6.9	11	75	15	52	9	48	2	39	1.49
100836--100921	24	3.8	24	72	17	85	10	45	2	41	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100827--100897	18	3.6	18	69	20	52	9	43	2	43	1.52
103122--108916	158	36.7	156	64	15	855	31	18	14	36	1.90
102515--111124	474	18.3	474	81	5	8589	31	18	13	36	1.90
109213--109882	157	4.2	157	69	12	467	30	18	14	36	1.90
109068--109890	158	5.2	157	69	12	463	30	18	14	36	1.91
111678--113450	479	3.7	472	81	5	2022	31	18	14	35	1.91
113921--113958	18	2.1	18	95	0	67	23	10	18	47	1.79
113461--123031	477	20.3	476	81	5	10146	31	18	14	35	1.91
120471--120499	14	2.1	14	100	0	58	24	41	0	34	1.55
127447--127509	33	1.9	33	96	0	117	15	41	0	42	1.47
127448--127516	33	2.1	33	91	0	111	15	42	0	42	1.47
129638--129692	9	6.4	9	71	12	53	43	0	41	14	1.45
129626--129720	42	2.3	42	88	3	138	42	1	44	12	1.49
135691--135755	30	2.2	30	88	5	96	9	44	3	43	1.51
135716--135761	21	2.2	21	92	0	74	10	43	2	43	1.51
144911--145029	42	2.8	42	88	0	175	8	45	1	44	1.44
144930--145023	24	4.1	23	70	19	72	9	43	1	45	1.43
144926--144996	18	3.6	18	69	20	52	9	42	1	46	1.46
147409--148121	359	2.0	356	83	3	894	32	19	13	34	1.91
148453--149095	159	4.1	158	68	14	424	30	17	15	37	1.90
147768--150921	476	6.6	469	80	8	3184	30	18	14	36	1.91
147768--150921	954	3.3	935	81	6	3427	30	18	14	36	1.91

Tables:   1

The End!