genome.fa.s2243.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2243
Parameters: 2 7 7 80 10 50 1000
Length:  246073

Tables:   1   2   

This is table  2  of  2  ( 152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164147--164202	19	2.9	19	86	2	76	30	14	14	41	1.85
165886--165915	12	2.5	12	88	0	51	40	3	33	23	1.71
181940--182275	114	2.9	115	79	3	358	41	10	9	38	1.72
182616--183225	51	11.9	51	71	10	228	25	17	20	36	1.94
182907--183062	52	3.0	51	79	10	163	28	14	19	37	1.91
182879--183063	103	1.8	102	85	1	262	28	14	18	38	1.90
182839--183210	52	7.2	52	72	9	152	26	16	19	37	1.93
183249--183448	51	3.9	50	70	8	172	25	16	18	40	1.91
185881--185974	31	2.9	31	81	9	100	29	23	11	35	1.90
186335--186478	63	2.3	63	88	0	216	34	16	14	34	1.89
186536--186598	32	1.9	33	90	3	101	41	15	14	28	1.87
187152--187176	13	1.9	13	100	0	50	48	8	8	36	1.62
188156--188216	32	1.9	32	86	6	88	31	11	13	44	1.79
194477--194573	31	3.0	30	74	15	95	30	23	9	36	1.86
194924--195084	63	2.6	63	88	0	232	34	18	13	34	1.89
195163--195187	13	1.9	13	100	0	50	36	16	16	32	1.90
200234--200310	20	3.8	20	86	6	111	40	11	15	32	1.84
205495--205541	24	2.0	23	88	12	69	44	12	12	29	1.80
209884--209930	6	7.8	6	87	0	58	36	10	21	31	1.88
209890--209933	18	2.4	18	92	0	70	38	11	18	31	1.86
209904--209941	18	2.1	18	90	0	58	44	7	15	31	1.75
210449--210489	21	2.0	21	85	9	57	51	12	19	17	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
216983--217023	20	2.0	21	90	9	66	41	24	17	17	1.89
217031--217057	13	2.1	13	100	0	54	29	14	14	40	1.86
217013--217075	32	1.9	33	87	9	94	28	15	17	38	1.91
223808--223851	23	1.9	23	100	0	88	45	9	13	31	1.75
224869--224941	21	3.5	20	81	9	83	30	1	24	43	1.63
233308--233848	270	2.0	270	90	1	843	35	22	12	30	1.90
238511--238535	13	1.9	13	100	0	50	36	16	16	32	1.90
238576--238634	13	4.1	13	76	23	64	33	16	13	35	1.88
238578--238654	32	2.4	33	97	2	147	33	18	12	35	1.89
245411--245708	158	1.9	158	84	5	397	32	16	3	47	1.62

Tables:   1   2

The End!