genome.fa.s2246.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2246
Parameters: 2 7 7 80 10 50 1000
Length:  156925

Tables:   1   2   

This is table  1  of  2  ( 146 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1842--2027	96	1.9	96	92	0	309	38	12	13	34	1.84
7535--7633	33	3.0	33	79	8	121	37	12	18	32	1.87
7651--7708	13	4.0	13	74	23	53	32	17	15	34	1.91
7665--7727	19	3.6	19	76	24	84	34	19	12	33	1.89
7652--7727	32	2.4	32	97	0	143	34	18	14	32	1.91
12182--12207	13	2.0	13	100	0	52	30	15	15	38	1.88
16740--16814	20	3.6	21	78	12	75	42	12	16	29	1.83
24165--24205	20	2.0	21	86	13	59	41	12	19	26	1.87
26088--26237	19	8.7	19	69	26	111	35	14	18	32	1.90
26114--26245	32	4.1	32	99	0	255	34	15	18	31	1.92
26286--26386	52	1.9	52	88	4	150	33	15	16	33	1.91
30757--30786	14	2.1	14	93	0	51	20	10	0	70	1.16
34046--34092	12	3.8	12	80	5	58	21	0	2	76	0.89
34048--34078	16	1.9	16	93	0	53	16	0	3	80	0.83
34590--34620	13	2.4	13	94	0	53	67	16	6	9	1.39
34979--35046	21	3.1	21	82	12	82	7	20	36	35	1.81
34979--35032	24	2.2	24	93	0	90	5	22	35	37	1.77
35041--35128	31	2.9	30	81	3	95	28	18	36	17	1.93
36331--36927	42	14.2	42	86	1	741	36	19	30	13	1.90
37505--37532	13	2.2	13	100	0	56	28	14	17	39	1.89
46448--46571	52	2.4	51	94	1	212	27	16	19	36	1.93
46448--46591	52	2.8	51	89	5	202	29	16	19	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46580--46604	13	1.9	13	100	0	50	36	16	16	32	1.90
46645--46711	33	2.0	33	88	0	98	40	13	11	34	1.81
46667--46691	13	1.9	13	100	0	50	32	16	16	36	1.90
47504--47900	49	7.8	53	89	3	289	32	16	26	24	1.96
47568--47900	49	6.7	49	94	1	540	31	18	26	24	1.97
47893--48051	32	5.0	32	88	6	234	16	17	36	29	1.92
49500--49613	1	114.0	1	75	0	93	0	1	10	86	0.68
49500--49613	9	12.6	9	79	18	105	0	1	10	86	0.68
49500--49614	8	13.9	8	83	11	110	0	1	11	86	0.70
49500--49614	44	2.6	42	85	9	158	0	1	11	86	0.70
49507--49613	55	1.9	56	88	5	164	0	1	10	86	0.68
57093--57127	17	2.1	17	100	0	70	40	5	22	31	1.78
63916--64039	52	2.4	51	94	1	212	27	16	19	36	1.93
63916--64059	52	2.8	51	89	5	202	29	16	19	34	1.94
64048--64072	13	1.9	13	100	0	50	36	16	16	32	1.90
64113--64179	33	2.0	33	88	0	98	40	13	11	34	1.81
64135--64159	13	1.9	13	100	0	50	32	16	16	36	1.90
69676--69720	22	2.0	23	82	4	56	44	2	20	33	1.63
74160--74190	16	2.0	15	93	6	53	19	0	3	77	0.90
75091--75143	24	2.2	24	82	0	61	13	24	28	33	1.93
75148--75230	31	2.7	31	84	0	103	27	16	36	19	1.93
81064--81128	33	2.0	33	87	6	96	26	32	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82121--82150	13	2.3	13	94	0	51	36	16	13	33	1.88
82106--82170	33	2.0	33	84	6	87	36	13	15	33	1.87
85070--85122	20	2.6	21	85	11	74	39	11	18	30	1.86
85070--85143	21	3.6	21	85	7	80	37	13	18	29	1.90
85089--85143	20	2.7	20	88	2	74	38	14	18	29	1.90
85168--85222	20	2.8	19	94	5	101	40	12	14	32	1.84
87641--88011	97	3.9	96	80	7	378	30	24	9	36	1.87
87641--88011	192	1.9	192	83	3	478	30	24	9	36	1.87
92184--92219	19	2.0	19	89	10	58	44	0	0	55	0.99
92341--92370	12	2.5	12	94	0	51	63	0	0	36	0.95
93451--93495	12	3.8	12	82	8	56	62	0	0	37	0.96
93485--93547	32	1.9	32	83	3	81	50	0	0	49	1.00
93453--93553	33	2.9	33	79	10	96	54	0	0	45	0.99
93504--93581	40	2.0	40	82	10	97	51	0	0	48	1.00
94050--94092	17	2.6	17	82	14	54	53	2	0	44	1.13
94718--94748	2	15.5	2	100	0	62	51	0	0	48	1.00
95178--95202	12	2.1	12	100	0	50	24	0	0	76	0.80
95928--95969	18	2.2	18	87	8	57	40	2	0	57	1.12
97136--97186	24	2.3	23	86	10	70	43	0	0	56	0.99
97543--97585	19	2.2	19	83	8	50	41	4	0	53	1.21
98225--98521	158	1.9	157	86	2	425	39	7	11	41	1.71
99900--99939	21	1.9	21	90	10	64	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100410--100438	2	14.5	2	100	0	58	51	0	0	48	1.00
101187--101229	17	2.6	17	85	10	54	39	6	4	48	1.51
101316--101359	20	2.2	20	84	8	63	52	0	0	47	1.00
101318--101359	19	2.2	20	91	4	68	52	0	0	47	1.00
101335--101383	14	3.4	14	78	15	64	51	0	0	48	1.00
101331--101395	29	2.2	29	100	0	130	49	0	0	50	1.00
102127--102153	2	13.5	2	100	0	54	48	0	0	51	1.00
102188--102232	6	7.5	6	87	0	63	0	40	17	42	1.50
103336--103382	3	15.7	3	81	0	58	31	2	27	38	1.69
103338--103377	21	1.9	21	100	0	80	30	2	25	42	1.68
103735--103770	15	2.4	15	90	0	54	27	2	47	22	1.65
104683--104708	2	13.0	2	100	0	52	50	0	0	50	1.00
104777--104840	29	2.2	29	84	13	80	37	0	1	60	1.06
104792--104833	19	2.2	20	86	4	59	30	0	2	66	1.04
104905--105017	35	3.6	30	67	26	74	58	2	0	38	1.18
104968--105039	22	3.1	22	77	18	67	55	1	1	41	1.17
105295--105333	21	1.9	21	89	5	62	48	0	0	51	1.00
105426--105510	22	3.6	24	76	17	72	50	2	0	47	1.14
105442--105517	25	3.2	24	77	18	79	51	2	0	46	1.15
105770--105827	21	2.8	21	82	7	82	41	5	0	53	1.23
107259--107304	19	2.6	18	77	16	51	47	0	2	50	1.13
107795--107853	21	2.8	21	77	10	66	54	1	0	44	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108155--108207	17	3.4	16	80	12	65	26	0	1	71	0.96
108443--108660	34	6.5	34	87	1	305	24	8	27	39	1.83
108443--108662	67	3.3	66	88	2	323	24	8	27	40	1.83
108443--108662	101	2.2	101	91	4	363	24	8	27	40	1.83
108965--109027	19	3.3	19	90	0	90	28	17	19	34	1.94
113093--113310	34	6.5	34	86	1	296	25	8	26	39	1.84
113093--113312	67	3.3	66	87	2	314	25	8	26	40	1.83
113093--113312	101	2.2	101	90	4	354	25	8	26	40	1.83
115169--115218	23	2.1	24	81	7	57	50	0	0	50	1.00
115340--115368	2	14.5	2	100	0	58	51	0	0	48	1.00
115640--115679	17	2.4	17	87	4	55	55	0	0	45	0.99
116616--116655	20	2.0	21	90	5	64	50	0	0	50	1.00
117057--117102	19	2.4	19	86	10	67	26	0	2	71	0.97
118492--118610	58	2.1	57	80	10	127	55	1	5	36	1.34
119452--119489	13	2.8	14	84	8	51	39	10	2	47	1.52
124061--124099	20	2.0	20	85	9	55	35	2	0	61	1.10
124343--124370	14	2.0	14	100	0	56	42	0	0	57	0.99
125211--125270	5	12.2	5	75	16	54	36	1	0	61	1.06
125210--125272	11	5.6	11	75	22	60	38	1	0	60	1.07
127027--127118	27	3.4	27	74	16	84	41	1	0	57	1.06
127030--127069	21	1.9	21	85	10	55	37	2	0	60	1.11
127084--127130	14	3.0	15	75	22	51	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128704--128751	17	2.7	18	83	6	62	60	0	6	33	1.22
128698--128781	30	2.8	29	76	16	82	64	1	4	29	1.22
129095--129139	16	2.9	15	80	9	54	51	6	0	42	1.28
129345--129402	10	6.0	10	80	8	66	58	6	0	34	1.25
129368--129419	19	2.8	19	80	8	63	61	3	0	34	1.14
129771--129859	24	3.9	24	69	20	73	55	2	3	39	1.29
129835--129906	17	3.9	17	70	16	54	47	1	0	51	1.09
129818--129899	12	6.6	12	69	22	53	48	1	0	50	1.08
129841--129922	39	2.1	39	90	0	128	46	1	0	52	1.08
130657--130702	23	2.0	24	91	4	76	65	2	0	32	1.05

Tables:   1   2