genome.fa.s2276.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2276
Parameters: 2 7 7 80 10 50 1000
Length:  194101

Tables:   1   2   

This is table  1  of  2  ( 180 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5921--5958	18	2.1	18	90	0	58	60	0	2	36	1.11
5977--6049	29	2.5	31	81	12	77	52	0	1	46	1.09
6027--6066	21	1.9	21	85	10	55	57	0	2	40	1.12
6585--6641	26	2.2	25	78	9	62	47	0	0	52	1.00
13502--13531	15	1.9	16	93	6	53	16	0	80	3	0.85
16693--16743	25	2.0	25	100	0	102	41	15	19	23	1.90
25942--25981	20	2.0	20	100	0	80	50	20	10	20	1.76
26186--26216	6	5.2	6	100	0	62	16	51	16	16	1.77
27136--27179	21	2.0	22	83	12	56	43	0	0	56	0.99
27514--27613	50	2.0	48	92	3	164	49	3	3	45	1.33
27994--28028	15	2.3	15	90	9	54	42	2	5	48	1.41
28083--28176	32	2.9	32	67	6	82	26	8	14	50	1.72
29348--29410	33	1.9	32	87	3	90	34	17	14	33	1.90
29482--29507	13	2.0	13	100	0	52	30	15	15	38	1.88
29464--29528	33	2.0	32	88	8	96	36	15	15	32	1.89
38873--38909	2	18.5	2	100	0	74	48	0	0	51	1.00
38896--39210	83	3.8	83	98	0	594	43	5	9	41	1.62
40838--40956	13	10.2	12	67	28	55	56	0	2	40	1.19
40837--40956	4	26.2	5	64	28	54	56	0	2	40	1.18
40856--40917	8	7.4	8	81	5	61	56	1	1	40	1.19
40861--40918	25	2.3	26	85	11	84	58	1	0	39	1.08
40861--40941	9	9.1	9	75	19	73	56	1	1	40	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42932--42957	8	3.2	8	100	0	52	26	0	0	73	0.84
43019--43171	81	1.9	80	91	1	252	45	11	11	31	1.77
43915--45325	607	2.3	606	80	6	1593	41	8	11	38	1.73
45940--46227	141	2.0	141	89	1	443	44	9	15	30	1.77
49284--49336	22	2.5	21	79	11	54	52	3	3	39	1.37
49691--49764	35	2.2	33	83	9	87	50	2	2	44	1.30
52060--52159	27	3.4	27	70	18	76	58	0	0	42	0.98
52063--52182	33	3.5	33	77	20	106	57	0	0	42	0.98
52094--52182	27	3.2	29	77	18	91	57	0	0	42	0.98
52095--52178	36	2.3	36	78	11	93	57	0	0	42	0.99
52099--52176	17	4.4	17	67	17	50	57	0	0	42	0.98
52099--52182	37	2.3	36	80	13	102	58	0	0	41	0.98
52761--52825	32	2.0	33	91	5	107	55	9	4	30	1.52
53740--53782	19	2.3	19	84	8	52	62	4	0	32	1.15
55488--55562	20	3.5	20	74	22	71	49	0	0	50	1.00
55492--55558	26	2.5	26	83	11	91	52	0	0	47	1.00
55792--55821	15	1.9	16	93	6	53	66	0	3	30	1.07
55790--55894	9	11.1	9	69	14	52	63	2	1	31	1.19
55911--55949	17	2.3	17	86	8	53	51	0	0	48	1.00
55911--55949	9	4.6	9	87	6	55	51	0	0	48	1.00
56068--56164	6	16.8	6	68	18	55	36	0	1	62	1.02
56068--56171	20	5.2	21	70	11	76	35	0	0	63	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58015--58059	23	2.0	23	82	8	56	46	0	4	48	1.22
59949--59980	2	16.0	2	93	0	55	46	0	3	50	1.17
60722--60990	105	2.6	105	83	3	308	43	3	6	46	1.46
70398--70598	98	2.0	100	93	2	343	44	14	11	28	1.81
71228--71329	51	2.0	51	100	0	204	33	11	19	35	1.88
83992--84049	27	2.1	27	100	0	116	31	8	20	39	1.83
84330--84485	82	1.9	84	82	2	199	32	17	17	32	1.93
86512--86541	2	15.0	2	100	0	60	50	0	0	50	1.00
88758--88867	57	1.9	57	98	0	211	22	12	29	35	1.91
92002--92081	28	2.9	27	80	9	81	38	0	1	60	1.05
92094--92148	5	11.2	5	74	18	53	63	1	0	34	1.05
92113--92172	20	3.0	20	81	13	54	55	6	0	38	1.27
92246--92283	19	2.0	19	89	0	58	36	0	0	63	0.95
92986--93065	40	2.0	39	80	9	90	60	0	0	40	0.97
93029--93084	26	2.1	26	86	6	76	55	0	0	44	0.99
93956--93989	6	5.7	6	85	0	50	50	0	2	47	1.16
94416--94455	21	2.0	21	85	5	55	62	0	2	35	1.09
94741--94799	22	2.8	21	71	10	57	64	0	0	35	0.94
95009--95036	3	9.3	3	100	0	56	67	32	0	0	0.91
99974--100005	2	16.0	2	100	0	64	50	0	0	50	1.00
100061--100107	16	2.9	16	78	12	60	48	0	2	48	1.13
100061--100121	32	1.9	31	86	3	86	52	0	3	44	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101684--101725	19	2.2	19	86	4	57	57	0	7	35	1.26
104610--104636	2	13.5	2	100	0	54	48	0	0	51	1.00
107391--107433	17	2.6	17	83	16	56	44	4	0	51	1.22
108069--108129	29	2.0	31	81	9	72	54	6	1	37	1.37
108081--108137	30	1.9	30	86	10	82	49	7	1	42	1.40
108679--108718	21	1.9	21	90	10	64	40	0	0	60	0.97
109177--109249	28	2.9	25	74	23	64	45	1	0	53	1.09
109872--109896	10	2.5	10	100	0	50	60	0	0	40	0.97
111148--111235	25	3.5	25	75	6	72	53	2	0	44	1.13
111169--111235	26	2.6	26	74	9	75	58	1	0	40	1.07
111223--111264	15	2.6	16	77	7	50	40	4	0	54	1.21
111918--111976	7	8.9	7	78	16	54	35	0	0	64	0.94
111897--111976	38	2.1	38	81	9	92	37	1	0	61	1.04
115408--115439	3	10.7	3	100	0	64	65	0	34	0	0.93
116425--116482	2	29.0	2	92	0	98	50	0	3	46	1.18
117038--117067	2	15.0	2	92	0	51	50	3	0	46	1.18
118281--118320	11	3.6	11	86	0	53	35	0	2	62	1.09
118683--118734	22	2.4	22	90	6	79	71	1	0	26	0.97
121017--121058	22	1.9	22	85	9	59	61	0	2	35	1.09
122225--122269	24	2.0	22	86	8	63	48	0	0	51	1.00
122140--122375	124	1.9	123	83	4	305	47	5	3	42	1.46
123113--123171	17	3.5	17	80	17	61	69	1	1	27	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123117--123178	22	2.9	21	72	15	54	69	1	3	25	1.13
123098--123190	39	2.3	42	78	12	95	63	3	3	30	1.26
123187--123236	15	3.1	17	70	21	52	52	0	0	48	1.00
123181--123243	18	3.6	18	72	27	64	52	0	0	47	1.00
126549--126579	16	1.9	16	100	0	62	32	12	19	35	1.90
126594--126631	20	1.9	20	100	0	76	44	10	13	31	1.77
126600--126670	20	3.5	20	78	0	70	43	12	9	33	1.76
127061--127252	45	4.1	47	80	7	198	33	16	28	21	1.95
127061--127222	47	3.5	47	83	5	195	33	16	29	20	1.94
127061--127252	92	2.1	93	82	4	237	33	16	28	21	1.95
127346--127405	28	2.1	28	87	6	86	21	18	30	30	1.97
127374--127797	32	13.4	32	86	1	545	21	18	28	31	1.97
127374--127998	64	10.2	63	83	6	571	22	19	28	29	1.98
127333--127797	96	4.9	96	87	2	626	21	19	27	31	1.98
127762--128045	85	3.3	84	78	6	295	23	19	30	26	1.98
127328--128045	32	23.8	28	80	8	284	22	19	28	29	1.98
132929--132977	22	2.2	22	100	0	98	67	8	8	16	1.40
133896--133970	20	3.8	20	80	3	80	40	12	13	34	1.81
133893--133970	40	2.0	39	87	2	111	39	12	12	34	1.82
140030--140067	20	1.9	20	100	0	76	44	10	13	31	1.77
140036--140106	20	3.5	20	78	0	70	42	12	11	33	1.79
140724--140754	16	1.9	16	93	0	53	32	3	6	58	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140722--140758	9	4.3	9	80	13	51	29	2	10	56	1.47
142963--143010	20	2.3	20	85	3	60	43	0	0	56	0.99
142802--143037	131	1.8	128	81	2	292	50	5	0	42	1.31
147244--147305	21	3.0	21	83	2	72	40	4	16	38	1.69
147258--147318	21	2.9	21	82	4	70	40	8	11	39	1.71
149116--149167	23	2.2	24	80	10	63	55	0	1	42	1.10
149395--149439	16	2.8	16	75	0	54	55	6	4	33	1.46
149512--149709	107	1.9	106	86	1	270	48	14	7	29	1.71
150045--150115	29	2.4	31	86	6	94	35	0	5	59	1.21
150071--150122	15	3.6	14	78	17	61	32	1	1	63	1.16

Tables:   1   2