Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2281
Parameters: 2 7 7 80 10 50 1000
Length:  210577

Tables:   1   2   

This is table  2  of  2  ( 158 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
155613--155708
29
3.3
29
71
8
81
40
7
0
52
1.29
155880--155910
4
7.8
4
100
0
62
74
0
0
25
0.82
156198--156232
17
2.0
18
88
5
54
48
0
2
48
1.16
156547--156587
20
2.0
21
90
4
66
36
0
0
63
0.95
157442--157496
28
2.0
27
82
10
67
41
0
10
47
1.39
157524--157577
26
2.1
26
86
6
74
42
3
0
53
1.18
157519--157583
26
2.6
24
72
13
60
40
3
0
56
1.15
158361--158399
2
19.5
2
100
0
78
51
0
0
48
1.00
161117--161149
17
1.9
17
93
0
57
54
0
0
45
0.99
163112--163165
27
2.0
27
100
0
108
40
3
14
40
1.64
169563--169599
18
2.1
18
100
0
74
27
0
0
72
0.84
170335--170381
14
3.5
13
80
8
58
55
2
0
42
1.12
171564--171618
28
2.0
28
96
0
101
18
9
23
49
1.76
174617--174662
21
2.2
21
88
7
67
45
15
8
30
1.76
174783--174838
29
1.9
29
85
0
76
37
17
5
39
1.73
177744--177782
20
1.9
20
84
5
51
61
0
2
35
1.10
178445--178513
21
3.3
21
73
18
63
60
1
0
37
1.06
179494--179547
20
2.6
20
85
11
65
48
9
0
42
1.35
179493--179739
67
3.8
65
72
13
188
49
8
3
38
1.50
179557--179666
39
2.8
39
81
4
114
51
8
3
36
1.49
179557--179666
20
5.6
20
69
13
77
51
8
3
36
1.49
179493--179738
126
2.0
125
83
5
318
49
8
3
38
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
180516--180565
19
2.8
17
80
14
55
44
0
0
56
0.99
180560--180607
15
3.1
15
77
14
53
39
2
0
58
1.10
180533--180643
11
10.1
11
67
14
50
40
2
0
56
1.13
180695--180772
37
2.1
37
97
0
147
35
24
10
29
1.88
182808--182854
25
1.9
25
83
12
62
44
2
2
51
1.25
182876--182920
21
2.2
20
84
8
54
44
0
0
55
0.99
191450--191487
3
12.7
3
100
0
76
65
0
0
34
0.93
191795--191852
30
1.9
30
82
6
73
55
0
1
43
1.10
195803--195949
79
1.9
79
82
0
186
29
9
19
42
1.82
198176--198270
47
2.0
47
100
0
190
22
29
8
40
1.83
200849--201015
52
3.2
52
84
0
217
41
11
4
43
1.60
200919--201032
52
2.2
52
85
3
149
45
7
2
44
1.44
200849--201039
104
1.9
102
80
8
226
42
9
3
43
1.55
202677--202719
21
2.0
21
91
8
70
48
13
6
30
1.69
207524--207708
34
5.5
34
88
3
266
40
27
7
25
1.82
207524--207708
102
1.8
101
94
1
325
40
27
7
25
1.82

Tables:   1   2

The End!