Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2283
Parameters: 2 7 7 80 10 50 1000
Length:  183339

Tables:   1   2   

This is table  2  of  2  ( 149 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
145745--145838
13
5.8
17
74
25
96
36
17
12
34
1.87
145743--145837
32
3.0
32
93
3
167
35
16
12
34
1.87
147503--147531
11
2.6
11
100
0
58
51
6
10
31
1.62
151742--151776
16
2.2
16
90
5
54
22
5
5
65
1.36
153834--153897
33
2.0
32
90
3
101
26
14
20
39
1.90
153854--153879
13
2.0
13
100
0
52
30
15
15
38
1.88
153979--154003
13
1.9
13
100
0
50
36
16
16
32
1.90
154701--154741
19
2.1
20
86
4
57
41
12
12
34
1.80
157084--157129
20
2.3
20
84
0
56
39
13
10
36
1.79
157095--157172
20
3.9
20
80
6
95
34
14
11
39
1.82
160566--161779
55
22.1
55
91
3
1857
28
31
20
19
1.97
161592--161674
27
3.0
27
60
16
62
28
30
19
21
1.98
162272--162299
14
2.0
14
100
0
56
78
0
7
14
0.95
162381--162448
19
3.9
19
78
21
85
35
11
14
38
1.83
162402--162426
13
1.9
13
100
0
50
36
16
16
32
1.90
162383--162445
32
2.0
32
96
0
117
34
12
15
36
1.86
162488--162513
13
2.0
13
100
0
52
30
15
15
38
1.88
162468--162534
33
2.0
33
88
0
98
25
14
16
43
1.86
164860--164993
51
2.6
52
79
9
150
32
25
9
32
1.88
165034--165206
52
3.4
51
81
2
211
30
24
12
32
1.92
165186--165267
28
2.9
28
83
7
96
24
32
17
25
1.96
177720--177780
14
4.5
13
76
12
61
85
6
8
0
0.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
177720--177780
26
2.2
28
88
5
90
85
6
8
0
0.75
177720--177750
11
2.8
11
95
0
53
90
6
3
0
0.55
178749--180831
56
37.8
55
76
16
1746
28
30
21
20
1.98
179455--179677
117
1.9
117
86
7
319
27
29
21
22
1.99
178749--180605
498
3.8
488
79
14
1603
28
30
21
20
1.98
181411--181470
31
1.9
31
90
6
95
36
13
15
35
1.86
181578--181625
19
2.5
19
86
10
62
33
16
12
37
1.86

Tables:   1   2

The End!