genome.fa.s2298.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2298
Parameters: 2 7 7 80 10 50 1000
Length:  581295

Tables:   1   2   3   

This is table  2  of  3  ( 330 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
397881--398015	23	5.7	23	78	18	134	86	10	1	1	0.70
397881--398013	27	5.3	24	79	17	130	86	10	1	1	0.71
397881--398015	54	2.5	55	85	9	179	86	10	1	1	0.70
399457--399997	30	18.3	29	79	7	341	30	29	16	23	1.96
399608--399699	35	2.7	36	78	8	102	19	30	11	38	1.88
399674--400013	28	11.8	28	86	5	414	32	30	17	18	1.95
399687--400025	171	2.0	175	93	3	589	32	30	17	19	1.95
399674--400013	115	2.9	113	88	5	486	32	30	17	18	1.95
400018--400338	49	6.8	47	84	10	406	27	25	16	30	1.97
400134--400201	21	3.2	20	66	25	50	27	26	16	29	1.97
400110--400294	43	4.2	43	88	8	289	27	25	16	29	1.97
400064--400338	92	3.0	92	96	1	487	27	25	16	30	1.97
400204--400272	22	3.2	22	62	25	56	26	26	17	30	1.97
400248--400401	52	2.9	53	79	6	177	24	23	16	35	1.94
401195--401261	33	2.0	33	88	0	98	34	11	13	40	1.81
401215--401239	13	1.9	13	100	0	50	36	16	16	32	1.90
401302--401326	13	1.9	13	100	0	50	32	16	16	36	1.90
401335--401458	52	2.4	52	94	1	214	35	18	17	28	1.94
408794--408851	30	1.9	30	89	6	91	31	15	15	37	1.89
411895--411938	24	1.9	24	86	9	65	29	20	13	36	1.91
413927--414178	115	2.2	115	81	5	276	35	14	13	36	1.85
415022--415148	12	10.6	11	72	20	78	27	18	22	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415022--415147	24	5.2	24	78	9	132	27	18	23	30	1.97
416660--416714	28	1.9	29	88	3	85	36	20	23	20	1.95
416748--416824	28	2.8	28	85	0	91	22	19	35	23	1.96
416669--416873	107	1.9	108	81	3	252	28	15	28	26	1.96
416812--416974	51	3.2	51	84	2	202	33	11	25	30	1.90
416915--417085	79	2.2	79	84	4	211	32	15	25	26	1.96
417038--417115	27	2.9	27	88	5	113	24	19	33	23	1.97
419442--419505	33	1.9	33	90	3	101	45	15	14	25	1.83
419537--419601	19	3.7	19	73	23	70	40	15	10	33	1.82
419529--419599	32	2.2	32	92	0	115	38	16	11	33	1.85
419637--419694	21	2.7	22	81	7	75	32	15	15	36	1.89
419705--419744	7	6.1	7	88	11	59	12	0	10	77	0.99
422714--422757	14	3.1	14	83	6	52	25	13	27	34	1.93
422829--422857	15	2.0	15	93	6	51	27	6	24	41	1.80
425581--425620	21	1.9	21	89	0	62	20	2	0	77	0.88
426466--426520	16	3.3	18	75	14	64	5	14	0	80	0.89
426465--426510	19	2.3	20	88	3	67	6	10	0	82	0.83
431760--431813	19	2.7	21	82	5	76	40	11	14	33	1.82
431864--431903	13	3.1	13	100	0	80	37	15	7	40	1.75
431848--431922	33	2.3	33	83	4	89	34	16	9	40	1.80
444173--444246	11	6.6	12	73	20	79	82	16	1	0	0.74
444173--444246	32	2.3	32	88	6	105	82	16	1	0	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445563--446275	49	15.0	49	74	11	518	26	25	16	31	1.97
445582--445930	137	2.5	137	91	0	538	27	26	16	29	1.97
445661--446167	186	2.7	185	86	1	717	26	25	17	30	1.97
445850--446113	136	1.9	137	85	2	361	25	25	18	30	1.98
445985--446216	105	2.3	99	85	5	297	24	25	18	32	1.97
445985--446262	52	5.5	51	80	7	237	24	25	16	32	1.96
446032--446262	105	2.2	101	82	4	266	24	26	16	32	1.96
446891--446941	21	2.5	21	84	6	70	39	9	15	35	1.81
447237--447320	19	4.7	19	81	18	108	33	11	17	36	1.87
447277--447301	13	1.9	13	100	0	50	36	16	16	32	1.90
447258--447325	32	2.1	32	97	0	127	33	11	17	36	1.86
461209--461298	17	5.2	17	80	9	85	84	11	1	3	0.79
461206--461298	10	9.6	10	76	11	95	83	11	1	3	0.81
461210--461298	28	3.1	29	83	4	92	84	11	1	3	0.80
461210--461310	18	5.8	18	78	13	88	82	12	1	2	0.88
461208--461298	1	91.0	1	71	0	56	84	10	1	3	0.79
462748--462890	30	4.8	30	77	10	134	30	32	16	20	1.95
462894--462983	32	2.8	32	86	5	110	17	33	15	33	1.92
462777--462920	58	2.5	61	83	10	169	29	33	15	20	1.94
462987--463550	91	5.9	92	76	12	359	24	25	18	31	1.98
463127--463204	39	2.0	39	87	5	113	33	26	20	19	1.96
463170--463550	52	7.6	52	79	9	380	23	26	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463307--463550	101	2.4	103	85	2	312	22	24	18	33	1.97
463071--463543	145	3.2	145	83	5	499	24	25	18	31	1.97
463071--463582	153	3.5	146	82	5	541	24	25	17	32	1.97
464324--464412	13	5.9	13	72	27	70	34	13	17	33	1.89
464304--464436	32	4.1	32	98	0	248	34	12	18	35	1.87
464302--464431	19	7.8	18	70	29	110	33	12	17	36	1.87
464474--464498	13	1.9	13	100	0	50	32	16	16	36	1.90
464507--464635	52	2.5	52	97	0	240	35	18	18	27	1.94
467027--467364	169	2.0	169	96	0	622	26	22	14	36	1.93
470649--470707	13	4.9	13	71	26	58	33	16	13	35	1.88
470648--470731	34	2.5	33	84	7	109	30	16	14	38	1.89
470716--470844	52	2.5	52	97	0	240	34	17	18	28	1.94
471110--471472	31	11.4	32	82	10	283	21	33	15	30	1.94
471235--471589	31	10.8	33	84	9	283	20	34	13	31	1.91
471141--471552	193	2.1	196	86	7	581	20	33	14	30	1.93
471134--471552	31	12.9	31	83	8	269	20	33	14	31	1.93
471453--471609	69	2.2	72	84	6	205	21	35	10	33	1.87
471591--471799	32	6.5	32	79	9	230	27	36	17	18	1.93
471601--471799	65	3.1	64	90	2	303	28	36	18	17	1.93
471601--471791	97	2.0	97	89	2	294	28	36	18	17	1.93
471792--472865	43	23.0	44	81	11	1036	24	24	18	32	1.97
471875--471945	21	3.2	24	63	19	62	25	25	19	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
471880--471948	22	3.2	22	63	19	54	24	26	17	31	1.97
471859--471926	21	3.2	21	63	19	50	26	26	17	29	1.98
472068--472918	95	9.0	92	87	7	1060	24	24	18	33	1.97
471787--472822	236	4.4	234	90	4	1365	24	24	18	32	1.97
472984--473087	53	2.0	52	84	1	136	27	25	14	32	1.94
473863--473887	13	1.9	13	100	0	50	36	16	16	32	1.90
473843--473908	32	2.0	33	94	2	116	34	12	16	36	1.86
473949--473973	13	1.9	13	100	0	50	32	16	16	36	1.90
473982--474110	52	2.5	52	97	0	240	34	17	18	28	1.94
479987--480172	58	3.2	58	92	0	300	17	17	30	34	1.94
487183--487233	16	3.1	17	76	21	63	54	3	1	39	1.30
487147--487216	18	3.9	18	71	17	65	62	4	0	32	1.14
491990--492028	21	1.9	20	89	5	60	46	2	0	51	1.14
492461--492506	18	2.6	18	82	0	56	39	0	6	54	1.26
493287--493335	15	2.9	17	82	14	66	36	0	0	63	0.95
493627--493666	15	2.5	17	76	19	50	37	0	2	60	1.11
496750--496901	69	2.2	69	92	0	250	37	13	20	28	1.90
498849--498916	8	8.2	8	72	18	50	22	1	4	72	1.11
498857--498916	15	3.6	18	76	8	56	21	1	5	71	1.14
498848--498916	24	2.8	24	80	6	77	23	1	4	71	1.12
498857--498916	17	3.6	16	76	12	59	21	1	5	71	1.14
499566--499690	61	2.0	61	90	6	200	37	12	27	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
499643--499733	43	2.1	43	89	0	137	30	15	26	27	1.96
499687--500094	52	8.0	51	78	5	324	33	13	25	26	1.94
499692--500132	156	2.9	153	77	5	373	33	14	24	27	1.94
499641--500169	52	10.9	49	75	9	311	32	14	25	27	1.95
500065--500132	21	3.2	21	63	19	50	38	13	17	30	1.88
500046--500159	43	2.7	43	88	1	167	34	16	21	28	1.95
500185--500313	32	4.0	33	82	7	156	20	18	31	29	1.97
500185--500313	65	2.0	65	86	3	179	20	18	31	29	1.97
500473--501332	32	26.3	31	68	16	147	35	12	30	21	1.91
500539--501575	99	10.5	98	77	11	832	33	13	31	21	1.91

Tables:   1   2   3