genome.fa.s2298.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2298
Parameters: 2 7 7 80 10 50 1000
Length:  581295

Tables:   1   2   3   

This is table  3  of  3  ( 330 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500770--501016	126	2.0	126	82	3	309	33	13	30	22	1.92
500445--501580	33	34.7	32	70	13	582	34	12	31	21	1.91
501197--501249	27	2.0	27	100	0	106	26	15	35	22	1.93
501217--501503	67	4.3	65	74	10	208	35	11	32	20	1.89
501523--501798	33	8.8	30	75	8	221	34	14	27	23	1.94
501523--501799	63	4.4	63	82	0	304	34	14	27	23	1.94
501523--501806	30	9.0	33	75	9	261	35	14	27	23	1.93
501534--501760	126	1.8	126	88	0	346	35	14	27	22	1.93
501529--501799	126	2.2	126	84	0	344	34	15	26	23	1.94
506346--506483	70	2.0	70	89	0	213	34	12	24	28	1.92
508647--508763	20	5.8	20	88	5	164	44	12	12	29	1.80
509633--510377	32	24.7	32	83	7	592	21	17	29	31	1.96
509625--510377	92	8.3	92	81	8	712	21	17	28	31	1.96
509620--510881	28	43.4	28	82	7	540	24	16	30	29	1.97
510344--511169	83	10.0	82	86	4	988	29	14	31	25	1.94
510322--511203	193	4.5	194	84	5	1068	29	14	30	25	1.95
510305--511203	28	32.4	28	84	5	1058	28	14	30	25	1.95
510305--511203	55	16.2	56	85	5	1058	28	14	30	25	1.95
520810--520966	70	2.2	70	90	0	251	31	12	27	28	1.92
521912--522005	14	7.2	14	67	24	62	27	19	12	40	1.88
521899--521956	23	2.5	23	91	2	98	22	22	12	43	1.86
522494--522585	32	2.7	34	81	15	109	31	13	21	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
524116--524174	21	2.8	21	86	0	73	61	0	22	16	1.35
525345--525370	13	2.0	13	100	0	52	30	15	15	38	1.88
525430--525502	20	3.6	20	81	3	101	31	19	13	35	1.91
525409--525502	41	2.3	41	96	0	170	30	18	12	38	1.88
525409--525484	21	3.7	21	78	3	91	30	17	11	40	1.85
526144--526185	21	2.0	21	100	0	84	52	19	4	23	1.65
527973--528010	13	2.9	13	96	0	67	31	15	18	34	1.92
527999--528075	20	3.6	20	77	16	73	42	15	15	25	1.86
530084--530114	15	2.1	15	93	0	53	12	22	16	48	1.80
534176--534201	13	2.0	13	100	0	52	30	15	15	38	1.88
534261--534333	20	3.6	20	81	3	101	31	19	13	35	1.91
534240--534333	41	2.3	41	96	0	170	30	18	12	38	1.88
534240--534315	21	3.7	21	78	3	91	30	17	11	40	1.85
537541--537567	13	2.1	13	100	0	54	29	14	14	40	1.86
537616--537657	13	3.2	13	86	0	57	26	11	21	40	1.88
539957--540082	20	5.8	20	68	21	74	42	11	15	30	1.83
542920--543071	69	2.2	69	92	1	252	35	13	22	28	1.92
542986--543168	97	1.9	96	83	5	235	34	13	24	28	1.92
544929--544974	19	2.5	19	78	3	58	23	0	4	71	1.03
544957--545017	24	2.4	26	75	8	72	22	1	3	72	1.09
544923--545017	16	5.6	16	73	17	77	24	1	4	70	1.11
546155--546359	61	3.3	61	89	4	288	24	26	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
546373--546634	61	4.4	60	79	7	295	24	25	21	28	1.99
546155--546576	217	1.9	219	84	7	570	24	26	20	27	1.99
546611--546815	47	4.5	47	76	10	192	19	26	14	40	1.90
546661--546881	42	5.0	44	77	11	202	19	25	13	41	1.87
546626--546900	135	2.1	131	85	6	367	20	25	13	40	1.89
546661--546881	89	2.5	89	83	5	304	19	25	13	41	1.87
546870--546986	39	3.2	36	79	19	120	19	26	12	41	1.88
546910--547046	39	3.4	39	83	6	159	18	27	11	41	1.86
547646--547808	49	3.7	49	68	25	153	26	16	15	41	1.88
547693--547868	20	8.7	20	71	20	125	27	16	14	42	1.87
547710--547759	13	4.3	13	72	27	58	28	14	14	44	1.83
547661--547828	82	2.0	82	91	0	273	26	17	14	41	1.88
548658--548835	51	3.5	51	83	4	211	29	25	11	33	1.91
548771--549196	79	5.5	78	81	6	481	28	25	13	32	1.94
550303--550328	13	2.0	13	100	0	52	38	7	0	53	1.30
550485--550521	19	2.0	19	94	5	67	43	10	0	45	1.39
550489--550532	19	2.4	19	85	11	56	45	9	0	45	1.35
550842--550913	26	2.8	27	85	6	87	66	1	0	31	1.00
550839--550940	41	2.5	41	82	4	127	64	0	0	33	1.07
550839--550930	18	4.6	19	76	20	82	64	1	1	33	1.08
550873--551165	145	2.0	145	97	0	559	52	6	12	28	1.65
552351--552376	13	2.0	13	100	0	52	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
553110--553178	20	3.3	20	71	6	57	50	1	2	44	1.25
554612--554649	13	2.6	16	84	16	55	57	0	2	39	1.12
555266--555308	2	21.5	2	100	0	86	51	0	0	48	1.00
555390--555438	20	2.5	20	93	0	80	34	12	0	53	1.39
555460--555565	22	4.8	22	72	19	78	62	1	1	33	1.17
555445--555511	28	2.4	28	87	9	93	61	0	1	37	1.05
555487--555538	23	2.4	21	81	12	61	61	1	3	32	1.25
555506--555566	27	2.2	28	80	8	72	62	3	1	32	1.21
555535--555606	38	1.9	37	88	2	108	59	5	0	34	1.21
555578--555615	19	2.0	19	85	10	51	60	0	0	39	0.97
555789--555861	29	2.5	29	82	6	76	46	4	0	49	1.21
557292--557341	20	2.3	23	80	12	63	40	4	0	56	1.18
557342--557399	17	3.4	17	80	4	64	50	1	1	46	1.22
557461--557535	30	2.6	28	75	10	78	44	0	0	56	0.99
558093--558122	2	15.0	2	100	0	60	50	0	0	50	1.00
558543--558580	19	2.0	19	100	0	76	21	5	36	36	1.76
558776--558846	34	2.1	35	97	2	135	29	15	19	35	1.93
563519--563566	2	24.0	2	100	0	96	50	0	0	50	1.00
564116--564156	3	13.7	3	100	0	82	31	0	0	68	0.90
564566--564705	41	3.4	41	81	2	147	42	14	15	27	1.86
566285--566337	27	2.0	27	88	7	81	30	13	9	47	1.74
567342--567399	25	2.3	26	90	3	91	41	13	8	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
568272--568346	20	3.8	20	76	0	87	34	12	12	41	1.79
572607--572647	20	2.0	20	85	0	55	12	9	7	70	1.33

Tables:   1   2   3

The End!