Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2335
Parameters: 2 7 7 80 10 50 1000
Length:  38564

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
782--987
80
2.6
79
81
5
258
28
16
30
24
1.97
1026--1157
52
2.6
52
89
3
205
30
9
27
32
1.89
3488--3513
13
2.0
13
100
0
52
38
15
15
30
1.88
3467--3533
34
2.0
33
91
2
107
44
13
16
25
1.84
3565--3650
19
4.7
19
72
20
76
37
16
11
34
1.85
3557--3630
32
2.3
32
95
0
130
35
17
10
36
1.85
6766--6805
14
2.8
15
78
21
50
62
2
0
35
1.09
7076--7131
14
4.0
14
74
6
51
50
1
3
44
1.29
15254--15291
18
2.1
18
90
0
58
55
10
10
23
1.65
20458--20651
106
1.8
105
86
1
280
37
10
11
40
1.77
20787--20840
22
2.7
20
86
13
76
62
5
0
31
1.18
20812--20841
12
2.5
12
94
0
51
66
3
0
30
1.07
21593--21636
3
14.7
3
100
0
88
68
0
0
31
0.90
24172--24406
117
2.0
117
96
0
434
46
11
8
33
1.70
25329--25366
18
2.1
18
90
0
58
57
10
7
23
1.58
28273--28316
20
2.2
20
100
0
88
47
9
4
38
1.56
31677--31717
7
6.0
7
91
5
66
0
2
14
82
0.76
31678--31717
20
2.0
21
95
5
73
0
2
15
82
0.77
31677--31717
13
3.1
13
92
3
64
0
2
14
82
0.76
32415--32622
79
2.6
79
83
2
274
28
16
29
25
1.97
32661--32793
52
2.6
52
90
2
214
30
9
27
33
1.89
35128--35153
13
2.0
13
100
0
52
38
15
15
30
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35107--35173
34
2.0
33
91
2
107
44
13
16
25
1.84
35205--35267
19
3.7
18
76
24
73
36
17
11
34
1.85
35197--35270
32
2.3
32
95
0
130
35
17
10
36
1.85

Tables:   1

The End!