genome.fa.s2344.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2344
Parameters: 2 7 7 80 10 50 1000
Length:  384062

Tables:   1   2   3   

This is table  2  of  3  ( 242 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226335--226365	10	3.1	10	90	0	53	22	29	6	41	1.78
226353--226408	21	2.6	22	94	5	105	26	25	10	37	1.88
226491--226516	13	2.0	13	100	0	52	30	15	23	30	1.95
226995--227061	37	1.9	35	88	11	102	32	11	25	29	1.92
230162--230186	13	1.9	13	100	0	50	36	16	16	32	1.90
231813--231853	21	2.0	21	85	9	57	39	12	9	39	1.76
231893--231963	20	3.6	19	77	7	70	40	16	12	29	1.86
232040--232070	10	3.1	10	90	0	53	22	29	6	41	1.78
232058--232113	21	2.6	22	94	5	105	26	25	10	37	1.88
232196--232221	13	2.0	13	100	0	52	30	15	23	30	1.95
232700--232766	37	1.9	35	88	11	102	32	11	25	29	1.92
234361--234884	80	6.6	79	83	6	632	33	12	26	28	1.92
234361--234884	158	3.3	157	86	5	709	33	12	26	28	1.92
234713--234772	29	2.0	31	87	6	88	35	11	23	30	1.90
236473--236499	13	2.1	13	100	0	54	29	14	14	40	1.86
236454--236518	32	2.0	32	90	3	103	26	16	15	41	1.88
236483--236539	19	2.9	19	89	2	87	31	15	17	35	1.92
244541--244628	21	4.5	19	84	4	79	37	1	28	32	1.65
244573--244618	19	2.4	19	92	0	74	34	2	39	23	1.67
245214--245240	13	2.1	13	100	0	54	29	14	14	40	1.86
245195--245259	32	2.0	33	87	3	96	27	15	13	43	1.85
247299--247324	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250569--250751	79	2.3	78	79	7	174	46	13	14	25	1.80
253875--253924	21	2.4	21	96	0	91	26	8	28	38	1.84
254259--254401	74	1.9	74	84	2	189	27	13	16	42	1.85
254644--254676	4	8.2	4	100	0	66	24	0	0	75	0.80
255785--255818	14	2.3	15	90	5	52	85	2	8	2	0.80
255785--255827	16	2.8	15	82	6	59	86	2	9	2	0.76
255795--255828	17	2.0	17	94	0	59	85	0	8	5	0.75
256839--256901	33	1.9	33	83	0	81	31	15	12	39	1.85
257230--257269	20	2.0	20	85	5	53	25	12	7	55	1.63
263450--263481	3	10.7	3	93	0	55	28	34	0	37	1.57
265149--265202	19	2.8	20	82	5	74	37	16	16	29	1.91
268939--268986	22	2.1	23	81	11	55	39	2	2	56	1.23
269116--269164	17	2.9	17	76	11	55	48	8	2	40	1.44
271592--271621	14	2.1	14	93	0	51	46	23	0	30	1.52
281164--281188	13	1.9	13	100	0	50	32	16	16	36	1.90
281144--281208	33	2.0	33	84	0	85	32	16	12	38	1.86
281240--281356	52	2.2	52	86	3	164	38	13	17	29	1.89
281240--281375	52	2.6	52	80	6	134	39	13	17	28	1.88
282362--282413	20	2.5	21	84	3	70	40	15	17	26	1.89
288409--288434	8	3.2	8	100	0	52	15	0	23	61	1.33
288644--288691	13	3.7	13	85	0	51	31	10	16	41	1.82
289128--289179	20	2.4	21	87	9	70	21	50	23	5	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
291152--291176	13	1.9	13	100	0	50	32	16	16	36	1.90
291164--291216	20	2.6	21	84	3	72	39	15	16	28	1.89
291250--291312	19	3.6	19	76	24	84	38	19	12	30	1.89
291269--291326	13	4.0	13	76	23	62	34	17	13	34	1.89
291249--291348	32	3.1	32	94	1	164	36	18	13	33	1.89
292689--292740	20	2.7	20	87	3	70	30	13	17	38	1.88
292773--292825	20	2.6	21	84	3	72	28	16	15	39	1.89
292814--292864	20	2.5	20	80	0	57	33	17	15	33	1.92
293320--293348	15	1.9	15	100	0	58	41	24	6	27	1.80
293331--293376	23	2.0	23	100	0	92	26	17	8	47	1.76
301527--301593	33	2.0	33	85	0	89	41	14	16	26	1.87
301613--301680	19	3.9	18	75	23	74	39	14	10	35	1.80
301635--301659	13	1.9	13	100	0	50	32	16	16	36	1.90
301618--301678	32	1.9	32	96	0	113	37	16	11	34	1.85
301716--301794	21	3.8	21	83	6	115	32	13	16	36	1.88
302640--302729	26	3.3	26	63	19	67	21	18	33	26	1.96
302532--303349	59	14.0	59	91	2	1137	24	21	28	25	1.99
304360--304402	17	2.5	17	92	0	68	0	0	13	86	0.58
304360--304402	22	2.0	22	90	0	68	0	0	13	86	0.58
309183--309223	21	2.0	21	85	9	57	39	12	9	39	1.76
309263--309333	20	3.6	19	77	7	70	39	16	14	29	1.88
309303--309439	53	2.6	53	92	1	229	37	16	18	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309404--309439	19	1.9	18	94	5	63	47	13	11	27	1.77
309463--309493	10	3.1	10	95	0	53	25	29	3	41	1.71
309481--309535	21	2.5	22	94	5	94	29	25	9	36	1.87
311524--311585	32	1.9	33	90	3	99	30	14	12	41	1.83
311616--311689	20	3.7	20	82	8	78	28	13	14	43	1.84
316009--316033	13	1.9	13	100	0	50	32	16	16	36	1.90
316083--316137	19	2.8	20	75	5	58	40	14	14	30	1.86
321268--321301	18	1.9	18	88	5	52	47	0	0	52	1.00
324105--324145	19	2.2	19	90	0	64	65	2	0	31	1.05
324281--324363	41	2.0	41	85	0	112	43	14	26	15	1.85
324467--324511	3	15.0	3	100	0	90	33	0	0	66	0.92
329914--330272	156	2.3	157	78	6	363	35	10	25	29	1.89
329870--330276	78	5.2	80	75	9	295	34	11	24	29	1.90
330232--330304	28	2.6	28	91	0	110	16	17	36	28	1.92
332721--332858	51	2.7	51	82	4	170	43	10	13	31	1.79
332914--332967	20	2.6	21	79	2	65	29	16	12	40	1.86
334515--334608	49	2.0	46	89	8	145	32	13	9	43	1.77
342754--342779	2	13.0	2	100	0	52	50	0	0	50	1.00
344922--344971	22	2.4	22	74	16	52	38	4	2	56	1.30
346585--346616	15	2.1	15	94	0	55	46	0	0	53	1.00
346635--346705	16	4.5	15	79	10	63	38	7	1	53	1.37
346739--346792	15	3.4	16	77	10	58	48	9	0	42	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346740--346795	16	3.6	16	73	11	53	48	8	0	42	1.34
346786--346833	12	3.5	14	86	11	64	56	0	0	43	0.99
346771--346911	30	4.9	29	73	17	98	49	1	0	48	1.09
346844--346899	14	3.9	14	75	11	60	46	0	0	53	1.00
346795--346959	16	11.1	16	68	18	65	46	1	0	51	1.16
346977--347003	5	5.4	5	100	0	54	62	0	0	37	0.95
352432--352477	2	23.0	2	100	0	92	50	0	0	50	1.00
355264--355344	41	2.0	41	90	0	126	39	16	17	27	1.90
356563--356623	13	4.8	13	73	16	56	40	0	0	59	0.98
357158--357222	16	3.9	18	75	22	70	46	0	0	53	1.00
357158--357216	18	3.3	19	81	11	63	45	0	0	54	0.99
357159--357230	16	4.6	15	73	14	56	47	0	0	52	1.00
359417--359460	17	2.6	17	79	13	54	38	0	6	54	1.27
359514--359541	5	5.6	5	100	0	56	60	0	0	39	0.97
359556--359654	33	3.0	33	68	18	80	45	4	2	48	1.32
359797--359850	26	2.1	26	96	0	99	35	7	5	51	1.53
360336--360399	13	5.0	13	72	14	53	65	0	0	34	0.93
360334--360401	23	3.0	22	80	8	73	64	0	0	35	0.94
360342--360403	11	5.4	12	76	20	62	66	0	0	33	0.92
360425--360455	2	15.5	2	100	0	62	51	0	0	48	1.00
361738--361771	17	2.1	16	88	5	50	50	0	0	50	1.00
364784--365247	232	2.0	232	93	0	802	31	14	9	44	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
366697--366734	20	2.0	20	85	10	53	26	10	0	63	1.27
368397--368902	232	2.2	232	98	0	967	32	14	7	46	1.71
372039--372063	13	1.9	13	100	0	50	36	16	16	32	1.90
372104--372170	33	2.0	33	88	0	98	40	13	11	34	1.81
372126--372150	13	1.9	13	100	0	50	32	16	16	36	1.90
372986--373229	49	4.8	49	86	4	283	32	16	25	25	1.96
373269--373490	88	2.6	87	92	3	367	20	17	27	33	1.95
373250--373700	57	7.7	59	75	10	336	24	16	29	30	1.96
373527--373699	29	5.9	29	81	6	170	25	17	29	27	1.97
373250--373703	30	15.5	30	77	9	366	24	16	29	30	1.96

Tables:   1   2   3