genome.fa.s2357.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2357
Parameters: 2 7 7 80 10 50 1000
Length:  72277

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--2224	327	6.8	326	88	3	3215	29	18	23	28	1.98
2125--2324	100	2.0	100	93	1	339	31	18	29	21	1.97
1798--3079	428	3.0	427	92	0	2118	30	18	24	26	1.98
2556--2751	100	2.0	100	90	2	313	32	18	27	20	1.97
2653--4059	328	4.3	328	90	2	2249	29	19	24	27	1.98
2653--4059	651	2.2	654	90	2	2263	29	19	24	27	1.98
3960--4159	100	2.0	100	92	1	330	30	19	29	21	1.97
4388--4587	100	2.0	100	90	1	312	31	19	28	21	1.97
3632--4915	428	3.0	427	92	0	2120	29	18	25	26	1.98
4488--5895	328	4.3	328	91	1	2270	29	18	24	27	1.98
5796--5995	100	2.0	100	92	1	330	31	18	29	21	1.97
5468--6751	428	3.0	426	93	0	2138	29	18	25	26	1.98
6227--6422	100	2.0	100	92	2	331	32	18	28	20	1.96
6324--7731	328	4.3	328	90	2	2247	29	18	24	27	1.98
7632--7831	100	2.0	100	92	1	330	30	19	29	21	1.97
7304--8574	427	3.0	427	92	0	2114	30	18	25	26	1.98
8059--8258	100	2.0	100	91	1	321	31	20	28	20	1.97
8159--9566	328	4.3	328	91	1	2277	29	18	24	27	1.98
9467--9666	100	2.0	100	93	1	339	31	18	29	21	1.97
9139--10422	428	3.0	425	92	0	2118	29	18	25	26	1.98
9898--10093	100	2.0	100	91	2	322	32	18	28	20	1.96
9995--11399	328	4.3	328	90	2	2220	29	19	24	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11300--11499	100	2.0	100	92	1	330	30	19	29	21	1.97
10972--12683	428	4.0	428	94	0	2861	30	18	25	26	1.98
11728--11927	100	2.0	100	90	1	312	30	20	28	20	1.98
12159--12354	100	2.0	100	92	2	331	32	18	28	20	1.96
12256--23493	328	34.3	327	90	1	17250	29	18	23	28	1.98
12256--23493	655	17.2	654	90	1	17187	29	18	23	28	1.98
12256--23493	983	11.4	981	92	1	17173	29	18	23	28	1.98
23394--23593	100	2.0	100	93	0	337	31	19	29	20	1.97
23066--23921	428	2.0	428	90	1	1367	29	18	25	26	1.98
23495--24900	328	4.3	328	90	2	2238	29	18	24	27	1.98
24805--25000	100	2.0	100	90	2	313	31	17	28	21	1.97
24473--25316	428	2.0	428	91	1	1379	30	17	25	26	1.98
24901--25655	327	2.3	328	90	0	1188	29	18	25	26	1.98
24150--27167	755	4.0	754	79	8	3464	29	18	24	27	1.98
25560--25746	100	1.9	100	93	2	322	31	17	29	21	1.96
25229--26511	428	3.0	428	92	0	2113	29	18	25	26	1.98
25984--26183	100	2.0	100	91	1	321	31	20	28	20	1.97
26084--29453	328	10.3	328	90	1	5237	29	18	23	27	1.98
26087--29453	655	5.1	655	90	1	5215	29	18	23	27	1.98
26084--29453	983	3.4	980	91	1	5384	29	18	23	27	1.98
29028--29871	426	2.0	426	91	1	1390	30	17	25	26	1.97
29454--30859	327	4.3	326	90	3	2134	29	18	24	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30765--30959	100	2.0	98	89	5	302	31	17	28	22	1.97
30860--31612	326	2.3	326	89	1	1150	29	18	24	26	1.98
30108--33121	753	4.0	754	78	9	3330	29	18	24	27	1.98
31517--31703	100	1.9	100	93	2	322	31	17	29	21	1.96
31186--32465	426	3.0	426	92	0	2087	29	18	25	26	1.98
31939--32138	100	2.0	100	91	1	321	31	20	28	20	1.97
32039--35412	328	10.3	327	90	2	5130	29	18	24	27	1.98
32039--35412	655	5.2	654	90	1	5130	29	18	24	27	1.98
35413--36488	327	3.3	328	94	1	1786	30	17	24	27	1.98
36397--36596	100	2.0	100	92	0	328	30	19	30	20	1.97
36070--37352	428	3.0	428	91	0	2061	29	18	25	26	1.98
36830--37025	100	2.0	100	90	2	313	31	17	28	21	1.97
34659--38108	755	4.6	756	81	7	4288	29	18	24	26	1.98
36926--37680	327	2.3	328	90	0	1179	29	18	24	26	1.98
37585--37771	100	1.9	100	93	2	322	31	17	29	21	1.96
37254--38536	428	3.0	428	92	0	2104	30	18	24	26	1.98
38009--38208	100	2.0	100	91	1	321	31	20	28	20	1.97
38109--42457	983	4.4	982	90	2	6677	29	18	24	28	1.98
42359--42558	100	2.0	100	91	1	321	31	18	30	20	1.96
42036--43300	426	3.0	425	89	3	1881	30	18	24	26	1.98
42791--42972	99	1.8	98	88	5	278	32	16	27	23	1.96
42885--43628	327	2.3	329	89	1	1145	29	18	25	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43544--43730	100	1.9	100	93	2	322	31	17	29	21	1.96
43214--44488	425	3.0	426	90	2	1987	30	19	24	25	1.98
43966--44165	100	2.0	99	89	4	305	31	21	27	20	1.98
44065--72277	655	42.9	655	89	2	40627	29	18	23	28	1.98
44065--72277	983	28.6	983	88	3	39597	29	18	23	28	1.98
62077--62276	100	2.0	100	91	1	321	31	20	29	20	1.97
38109--72277	328	103.8	328	84	5	39492	29	18	23	28	1.98

Tables:   1

The End!