genome.fa.s2363.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2363
Parameters: 2 7 7 80 10 50 1000
Length:  44893

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--19500	476	41.0	475	98	0	37347	37	14	18	29	1.90
20345--34436	483	28.6	476	77	15	11971	28	18	16	36	1.93
34589--34623	9	4.0	9	85	7	54	17	0	82	0	0.66
34589--34621	17	1.9	17	100	0	66	12	0	87	0	0.53
34627--34673	21	2.3	20	82	13	60	48	0	51	0	1.00
34628--34689	22	2.7	23	80	11	58	53	0	46	0	1.00
34642--34689	24	1.9	26	84	16	66	50	0	50	0	1.00
34749--34782	17	1.9	17	88	5	50	52	2	44	0	1.16
34758--34804	16	2.9	16	77	3	58	44	2	53	0	1.12
34787--34847	31	2.0	30	81	15	72	44	0	55	0	0.99
34846--34886	15	2.9	14	82	7	55	73	0	26	0	0.84
34846--34880	16	2.3	15	95	5	61	80	0	20	0	0.72
34846--34890	14	3.1	16	75	18	53	73	0	26	0	0.84
34868--34921	24	2.3	23	79	14	65	61	0	38	0	0.96
34874--34920	24	1.9	25	86	4	69	61	0	38	0	0.96
34933--34975	22	2.1	22	83	12	56	60	2	37	0	1.10
34973--35014	13	3.4	13	87	9	61	45	0	54	0	0.99
35009--35053	19	2.3	21	75	21	53	71	0	28	0	0.87
35034--35099	35	1.9	35	84	9	91	57	0	42	0	0.98
34934--35100	86	1.9	87	81	7	205	56	0	42	0	1.03
35098--35150	13	3.9	13	81	16	63	13	0	86	0	0.56
35086--35149	31	2.0	32	87	3	94	18	0	81	0	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35097--35177	36	2.4	35	86	13	109	18	0	81	0	0.69
35098--35149	1	52.0	1	80	0	50	11	0	88	0	0.52

Tables:   1

The End!