genome.fa.s2382.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2382
Parameters: 2 7 7 80 10 50 1000
Length:  109534

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3412--3490	13	5.9	13	78	19	65	81	7	11	0	0.89
3413--3463	14	3.6	14	89	5	68	86	7	5	0	0.71
3413--3488	15	5.1	14	80	12	71	82	6	10	0	0.82
4503--4592	26	3.3	26	68	14	74	30	32	17	20	1.95
4456--5078	55	11.3	55	89	3	882	28	30	20	20	1.98
4474--4562	28	3.2	29	64	15	78	29	31	19	20	1.97
4627--4709	26	3.1	26	62	16	60	32	30	18	19	1.95
4859--5006	29	5.3	29	62	19	82	27	31	18	21	1.97
5842--5898	21	2.7	21	97	0	105	33	10	19	36	1.86
6042--6067	13	2.0	13	100	0	52	30	15	15	38	1.88
6022--6088	33	2.0	33	88	0	98	26	14	14	43	1.85
8536--8608	27	2.6	28	83	10	89	21	32	23	21	1.98
8591--8811	52	4.3	50	76	4	181	30	23	12	33	1.91
8800--8871	28	2.6	28	86	0	90	22	33	19	25	1.97
8422--8917	263	1.9	263	87	3	730	28	25	13	32	1.94
8746--8950	107	1.9	107	81	5	243	25	27	16	30	1.97
8825--9059	80	2.9	77	77	6	236	25	28	14	30	1.95
14361--14387	13	2.1	13	100	0	54	29	14	14	40	1.86
23230--23290	1	61.0	1	75	0	50	86	4	1	6	0.74
23230--23279	15	3.6	14	76	7	57	88	2	2	8	0.68
23233--23283	18	2.8	18	81	0	75	86	3	1	7	0.77
24098--24163	27	2.4	28	77	10	64	33	25	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24725--24800	34	2.2	34	97	0	143	23	31	19	25	1.98
24867--25150	32	9.0	32	82	7	309	30	32	17	19	1.95
24867--25150	64	4.5	63	84	5	360	30	32	17	19	1.95
24871--25150	96	2.9	95	84	5	377	30	32	17	19	1.95
25247--25607	104	3.5	104	82	4	390	26	23	14	35	1.94
25252--25599	52	6.7	51	73	7	254	26	23	14	35	1.94
30563--30596	16	2.1	16	89	10	52	11	14	0	73	1.10
30831--30882	21	2.5	21	90	6	79	5	13	0	80	0.88
30831--30882	7	7.4	7	84	6	70	5	13	0	80	0.88
32021--32137	61	1.9	62	82	5	148	37	7	23	31	1.83
32308--32549	131	1.8	131	82	1	306	48	8	16	26	1.74
34976--35350	79	4.8	78	77	10	349	33	11	24	30	1.91
34976--35351	158	2.4	156	81	6	431	33	11	24	30	1.91
35287--35404	51	2.3	52	88	2	168	28	11	28	30	1.92
37696--37734	20	2.0	20	94	0	69	38	10	12	38	1.78
37786--37837	20	2.6	20	84	6	70	44	13	15	26	1.84
41542--41638	41	2.4	41	84	6	117	48	9	24	17	1.76
41628--41752	42	3.0	41	74	5	115	43	15	23	18	1.87
41644--41809	43	3.8	43	70	13	133	40	13	27	18	1.89
41723--41830	45	2.6	38	79	12	108	32	14	31	21	1.94
41800--42243	61	7.6	60	81	9	417	29	19	25	25	1.99
41805--42241	116	3.8	116	78	10	416	28	19	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42072--42157	27	3.1	27	63	3	73	27	18	23	30	1.98
42110--42398	155	1.9	155	87	4	431	28	18	27	25	1.98
42262--42508	55	4.4	55	88	3	296	25	20	26	27	1.99
42049--42456	210	1.9	207	83	10	524	26	19	27	26	1.99
42259--42508	110	2.2	112	85	5	335	25	20	26	27	1.99
41984--42613	265	2.4	266	85	5	832	27	18	27	26	1.98
43592--43635	14	3.4	13	84	6	54	0	2	9	88	0.59
43592--43634	22	2.0	22	90	9	70	0	2	9	88	0.60
52913--53081	52	3.2	52	79	8	157	31	13	25	28	1.94
53055--53139	27	3.1	27	86	8	111	25	21	30	22	1.98
52847--53250	212	1.9	212	86	3	580	31	13	26	28	1.94
53158--53255	51	1.9	51	82	0	124	35	8	22	33	1.84
55682--55706	13	1.9	13	100	0	50	32	16	16	36	1.90
55663--55727	32	2.0	32	93	0	112	35	13	13	36	1.85
55660--55725	19	3.8	18	74	24	70	36	13	13	36	1.85
58448--59028	55	10.3	55	86	7	676	23	20	28	26	1.99
58606--58693	26	3.3	26	66	25	74	20	18	34	27	1.96
59994--60067	36	2.0	37	82	10	89	0	12	6	81	0.88
60009--60069	28	2.2	28	85	11	81	0	8	6	85	0.75
60009--60053	12	3.7	12	85	5	54	0	6	6	86	0.70
60024--60058	11	3.1	11	88	8	52	0	8	2	88	0.61
59995--60069	17	4.3	17	73	9	62	0	12	5	82	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75934--76311	79	4.8	79	78	5	325	33	13	23	29	1.93
75934--76311	158	2.4	158	82	3	449	33	13	23	29	1.93
82093--82272	92	2.0	90	95	2	324	36	15	17	31	1.91
82439--82601	40	4.1	40	75	7	143	44	12	22	20	1.84
82530--82681	40	3.8	40	74	17	145	45	11	21	21	1.83
82424--82682	120	2.2	120	80	10	280	44	12	23	19	1.84
82708--82842	41	3.3	40	80	8	114	42	13	22	21	1.88
82746--82842	41	2.4	41	84	6	126	40	13	23	22	1.89
82850--83027	40	4.4	40	76	11	141	51	16	12	18	1.76
82813--83114	41	7.4	40	74	8	146	46	14	18	20	1.84
84887--84949	10	6.1	10	78	14	65	22	25	11	41	1.86
86760--86798	20	2.1	19	85	9	53	56	10	10	23	1.63
88441--88572	48	2.8	48	88	0	183	35	18	25	19	1.95
88637--90274	28	55.6	28	79	9	868	22	17	30	29	1.96
88663--90323	64	28.3	56	80	8	831	23	16	30	29	1.96
88637--89880	32	41.2	32	81	7	960	20	17	30	31	1.96
88707--89983	124	10.6	122	79	10	898	21	17	30	30	1.96
89935--90371	27	15.9	27	86	2	525	29	14	32	23	1.94
89935--90379	192	2.3	192	85	0	593	30	14	32	23	1.94
89882--90387	28	18.2	28	83	3	526	29	14	31	23	1.95
91492--102016	508	20.7	508	95	0	18938	27	24	19	28	1.99
101562--102472	455	2.0	461	96	2	1687	28	24	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102030--109518	508	14.7	508	96	1	13729	27	24	19	27	1.99

Tables:   1

The End!