genome.fa.s2387.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2387
Parameters: 2 7 7 80 10 50 1000
Length:  75082

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1560--1600	19	2.1	20	86	4	57	29	0	0	70	0.87
3056--3099	16	2.8	16	92	0	70	43	0	0	56	0.99
3110--3144	18	1.9	18	88	0	52	42	0	8	48	1.33
3471--3498	11	2.5	11	100	0	56	46	0	0	53	1.00
3472--3558	27	3.3	27	75	20	85	50	0	0	49	1.00
4106--4173	29	2.2	30	82	7	75	36	0	0	63	0.95
4095--4172	40	2.0	38	85	14	106	37	0	0	62	0.95
5347--5377	16	1.9	16	93	0	53	51	0	0	48	1.00
5954--6003	25	1.9	27	84	8	68	54	2	2	42	1.23
7673--7790	62	1.9	59	81	8	139	51	2	3	42	1.32
8446--8515	23	3.0	23	69	18	56	40	1	2	55	1.23
8990--9028	20	2.0	19	85	14	53	41	17	10	30	1.83
9954--10007	17	3.2	18	73	26	55	59	0	0	40	0.98
9957--10024	22	3.5	20	77	18	56	54	0	0	45	0.99
10147--10189	21	2.0	22	86	13	63	41	6	0	51	1.29
10369--10450	9	9.7	9	71	19	52	59	0	0	40	0.97
10370--10407	12	3.1	12	92	3	58	65	0	0	34	0.93
10373--10412	21	2.0	20	95	5	71	65	0	0	35	0.93
10350--10458	36	2.8	38	80	14	109	56	0	1	41	1.10
10371--10449	24	3.2	25	81	13	92	59	0	0	40	0.97
10455--10490	16	2.2	17	90	9	58	27	2	0	69	1.02
10756--10804	21	2.3	21	79	10	55	36	2	0	61	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10765--10829	27	2.5	25	78	11	67	43	3	0	53	1.16
11584--11616	15	2.1	16	88	5	50	42	0	6	51	1.26
16406--16467	24	2.5	25	81	2	63	53	3	3	40	1.33
16406--16467	25	2.5	24	80	12	65	53	3	3	40	1.33
16736--16774	18	2.1	20	86	13	57	43	0	0	56	0.99
16731--16783	19	2.7	20	77	14	56	49	0	0	50	1.00
17582--17608	2	13.5	2	100	0	54	48	0	0	51	1.00
19652--19686	17	2.0	18	94	5	63	57	0	0	42	0.99
32081--32127	2	23.5	2	100	0	94	51	0	0	48	1.00
33981--34014	3	11.3	3	100	0	68	35	0	0	64	0.94
36052--36103	27	1.9	27	84	0	68	36	7	7	48	1.61
37507--37623	34	3.5	34	90	1	182	40	23	7	28	1.82
41559--41621	19	3.3	19	90	0	90	34	19	17	28	1.94
41926--42042	34	3.5	34	90	1	182	40	23	7	28	1.82
42906--42939	17	2.0	17	94	0	59	38	23	8	29	1.85
42993--43054	19	3.3	19	82	15	83	59	0	0	40	0.97
42999--43073	16	4.3	16	78	17	60	58	0	0	41	0.98
43214--43281	26	2.4	27	83	9	75	63	0	0	36	0.95
45328--45379	21	2.5	21	87	6	70	28	26	9	34	1.88
47011--47635	156	4.0	155	74	4	499	39	16	14	30	1.88
52146--52402	96	2.7	95	83	4	300	30	21	9	39	1.84
55316--55346	2	15.5	2	93	0	53	51	3	0	45	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56742--56774	3	11.3	3	93	6	59	69	0	0	30	0.88
62847--62892	18	2.4	18	82	7	56	34	4	0	60	1.16
64486--64552	17	4.1	16	75	9	64	43	0	0	56	0.99
64486--64552	15	4.1	15	75	19	55	43	0	0	56	0.99
64488--64545	18	3.3	18	81	13	59	44	0	0	55	0.99
66710--66745	2	18.0	2	100	0	72	0	50	0	50	1.00
66829--66914	28	3.0	29	77	13	88	34	0	2	62	1.08
66853--66894	13	3.1	13	89	6	57	40	0	0	59	0.97
70640--70681	21	2.0	21	81	9	50	47	2	0	50	1.14
71850--71893	18	2.4	17	85	14	61	50	0	0	50	1.00
74853--74892	3	13.3	3	100	0	80	32	0	0	67	0.91

Tables:   1

The End!