genome.fa.s241.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold241
Parameters: 2 7 7 80 10 50 1000
Length:  220199

Tables:   1   2   

This is table  1  of  2  ( 151 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
959--1005	22	2.3	19	85	10	58	74	0	23	2	0.93
2002--2061	25	2.4	25	70	10	59	65	3	1	30	1.19
3106--3171	30	2.2	30	83	5	80	36	1	0	62	1.05
4049--4105	29	1.9	30	92	3	98	57	1	3	36	1.26
5789--5818	2	15.0	2	100	0	60	50	0	0	50	1.00
6010--6037	7	4.0	7	100	0	56	42	0	0	57	0.99
6199--6235	2	18.5	2	100	0	74	48	0	0	51	1.00
6608--6646	12	3.2	12	88	3	51	74	0	10	15	1.07
10493--10527	13	2.6	14	86	13	56	40	0	0	60	0.97
11013--11047	17	2.0	17	94	5	61	48	0	0	51	1.00
10981--11033	26	2.1	27	89	10	85	45	1	0	52	1.11
11049--11111	17	3.6	17	77	14	58	46	3	3	47	1.34
12410--12524	18	6.7	18	71	22	70	40	0	1	58	1.08
12410--12460	20	2.7	19	85	8	61	39	0	3	56	1.18
12433--12500	31	2.2	31	89	5	102	42	0	0	57	0.98
12429--12528	8	12.2	8	70	19	55	42	0	0	58	0.98
12482--12532	11	4.4	13	74	23	51	39	0	0	60	0.97
12429--12532	31	3.5	31	72	22	89	42	0	0	57	0.98
12458--12529	28	2.8	27	78	17	82	38	0	0	61	0.96
13165--13239	29	2.7	28	74	8	73	56	0	1	42	1.08
13270--13311	12	3.2	13	80	10	50	52	0	0	47	1.00
13649--13694	18	2.5	18	86	13	67	2	26	0	71	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14025--14084	18	3.4	18	77	13	54	38	3	0	58	1.15
14109--14139	2	15.5	2	93	0	53	48	3	0	48	1.17
15378--15448	28	2.5	28	80	10	83	53	1	2	42	1.24
15392--15459	28	2.5	28	78	7	77	52	1	2	42	1.25
15717--15758	2	21.0	2	95	0	75	50	0	47	2	1.14
22909--23069	79	2.0	79	100	0	322	26	13	22	37	1.92
26686--26730	23	2.0	23	86	0	63	28	20	4	46	1.69
28807--28837	15	2.1	15	93	0	53	45	0	0	54	0.99
29172--29207	2	18.0	2	100	0	72	50	0	0	50	1.00
32697--32724	2	14.0	2	100	0	56	50	0	0	50	1.00
33305--33444	72	2.0	72	88	1	210	34	32	10	22	1.88
33376--33520	58	2.5	58	88	5	204	35	31	11	21	1.89
35053--35082	6	5.0	6	91	0	51	46	0	3	50	1.18
35479--35513	2	17.5	2	100	0	70	48	0	0	51	1.00
36189--36230	20	2.0	21	86	4	59	23	0	11	64	1.27
36320--36390	27	2.6	27	86	6	90	23	5	23	46	1.74
37991--38263	136	2.0	136	100	0	546	28	17	27	26	1.98
41012--41080	27	2.5	27	83	6	77	26	7	20	46	1.76
41164--41201	20	1.9	20	88	0	58	13	42	5	39	1.66
41525--41573	23	2.1	23	81	7	55	63	4	16	16	1.46
41641--41670	2	15.0	2	100	0	60	50	0	0	50	1.00
41763--41815	3	17.3	3	96	3	97	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42387--42422	2	18.0	2	94	0	63	52	0	0	47	1.00
44299--44332	16	2.1	15	89	10	50	41	0	0	58	0.98
47077--47126	24	2.0	25	85	11	68	38	0	2	60	1.09
47373--47403	2	15.5	2	100	0	62	48	0	0	51	1.00
48693--48732	11	3.6	11	86	0	53	45	0	2	52	1.14
50106--50454	174	2.0	174	100	0	698	41	6	7	43	1.59
59293--59353	21	2.9	21	80	11	70	45	0	0	54	1.00
59295--59394	21	4.7	21	71	12	51	49	2	1	48	1.19
60147--60188	20	2.1	20	90	0	66	35	2	0	61	1.09
65236--65273	2	19.0	2	100	0	76	50	0	0	50	1.00
65336--65441	38	2.8	37	94	2	178	36	11	5	46	1.64
65522--65557	3	12.0	3	87	0	54	63	2	2	30	1.22
71205--71250	21	2.1	22	84	4	58	19	30	19	30	1.97
75692--75731	16	2.5	16	83	0	53	27	17	0	55	1.43
76914--76957	18	2.4	18	88	0	61	45	2	6	45	1.42
79519--79573	26	2.1	26	83	6	67	30	0	5	63	1.17
79623--79686	22	2.7	24	80	11	78	60	1	0	37	1.06
79704--79763	31	1.9	32	86	10	88	63	0	0	36	0.95
79744--79798	24	2.2	25	90	9	87	50	0	1	47	1.11
79753--79804	24	2.2	24	89	6	79	48	1	3	46	1.31
83182--83476	50	5.9	50	92	0	455	29	18	21	30	1.97
87832--88105	50	5.5	50	89	0	406	33	19	18	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87818--88126	150	2.1	150	89	3	471	33	18	18	29	1.95
87818--88126	50	6.2	51	87	4	384	33	18	18	29	1.95
91780--91808	2	14.5	2	100	0	58	51	0	0	48	1.00
92678--92720	18	2.4	19	80	11	54	48	2	0	48	1.14
92791--92849	31	1.9	32	86	6	86	50	5	3	40	1.41
94328--94365	18	2.2	17	86	13	51	26	13	0	60	1.33
94608--94652	18	2.5	18	88	0	63	51	2	2	44	1.26
95055--95129	23	3.0	23	67	27	55	30	4	8	57	1.46
97037--97085	15	3.1	16	76	8	55	59	0	0	40	0.98
97067--97121	24	2.3	23	84	12	74	49	1	0	49	1.11
101179--101251	27	2.7	27	85	4	94	27	6	17	47	1.73
101206--101268	27	2.5	25	82	7	74	28	7	19	44	1.78
105687--105759	27	2.7	27	91	0	110	23	6	23	46	1.76
105686--105776	27	3.5	25	78	11	94	24	7	21	46	1.78
107599--107635	2	18.5	2	100	0	74	48	0	0	51	1.00
108012--108064	14	3.6	14	78	9	52	1	16	3	77	1.01
108012--108063	22	2.4	21	81	9	59	1	17	3	76	1.02
108302--108342	18	2.4	17	87	4	55	7	19	0	73	1.07
108488--108545	29	2.0	30	82	3	73	41	6	0	51	1.28
108764--108833	32	2.2	32	97	0	131	17	27	34	21	1.95
109280--109337	27	2.1	27	96	0	107	31	0	39	29	1.57
116738--116772	16	2.1	17	89	5	54	48	2	5	42	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116953--116988	2	18.0	2	100	0	72	50	0	0	50	1.00
119315--119345	2	15.5	2	100	0	62	51	0	0	48	1.00
119992--120024	15	2.3	15	89	5	50	30	15	0	54	1.41
120132--120205	27	2.7	27	87	2	103	24	8	18	48	1.75
122772--122817	21	2.1	22	88	4	67	32	15	28	23	1.95
124695--124770	27	2.8	28	80	8	93	23	9	17	50	1.74
125528--125561	6	5.7	6	86	13	52	38	0	0	61	0.96
125528--125561	17	1.9	18	94	5	61	38	0	0	61	0.96
125512--125610	43	2.3	44	79	10	114	38	1	3	57	1.21
127993--128017	12	2.1	12	100	0	50	48	16	8	28	1.74
130902--130947	24	1.9	24	86	0	65	43	26	6	23	1.78
130928--131005	28	2.9	27	83	9	97	50	23	5	21	1.69
131387--131419	15	2.1	17	88	11	52	42	0	3	54	1.15
134264--134382	34	3.5	33	82	8	159	42	26	5	24	1.77
138788--138904	34	3.5	33	84	9	164	41	26	6	24	1.80
138970--139001	7	4.6	7	100	0	64	25	0	0	75	0.81
139568--139601	16	2.1	15	89	10	50	26	0	0	73	0.83
141356--141388	2	17.0	2	87	6	50	45	0	0	54	0.99
141674--141712	9	4.0	9	81	18	51	56	0	2	41	1.13
148294--148364	30	2.4	30	83	6	83	26	7	11	54	1.61
149865--149988	66	1.9	66	86	4	182	28	18	12	41	1.86
151818--151901	22	3.5	22	77	19	78	44	3	2	50	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151798--151872	28	2.6	28	93	2	123	44	1	0	54	1.08
154432--154477	21	2.1	22	84	4	58	34	17	26	21	1.95
160514--160553	21	2.0	20	90	5	62	25	2	0	72	0.97
160591--160630	2	20.0	2	100	0	80	50	0	0	50	1.00
162826--162919	47	2.0	47	97	0	179	45	21	1	31	1.59
162840--162918	25	3.3	25	70	10	83	41	22	1	34	1.62
167858--167919	27	2.3	27	94	0	106	38	1	1	58	1.18
167894--167948	21	2.5	21	82	14	58	43	3	5	47	1.44
170479--170524	21	2.1	22	88	4	67	32	19	28	19	1.96
171995--172040	24	1.9	24	86	8	67	21	8	28	41	1.83

Tables:   1   2