Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold241
Parameters: 2 7 7 80 10 50 1000
Length:  220199

Tables:   1   2   

This is table  2  of  2  ( 151 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
175522--175548
2
13.5
2
100
0
54
51
0
0
48
1.00
176235--176264
2
15.0
2
100
0
60
50
0
0
50
1.00
177813--177921
48
2.3
48
93
1
184
61
6
2
29
1.35
177851--177921
37
1.9
37
88
5
108
61
5
2
29
1.33
178520--178613
47
2.0
47
95
0
170
45
20
1
32
1.58
178536--178612
25
3.2
25
69
10
79
42
22
1
33
1.62
182327--182362
18
1.9
19
94
5
65
8
16
0
75
1.04
183625--183649
13
1.9
13
100
0
50
28
8
40
24
1.83
183733--183807
27
2.8
27
89
0
123
48
22
6
22
1.74
185399--185856
149
3.0
152
81
7
536
15
31
10
42
1.81
187383--187412
10
3.0
10
95
0
51
43
0
0
56
0.99
190556--190593
19
2.1
19
85
9
53
31
5
5
57
1.43
195063--195113
16
3.0
17
75
18
52
54
0
1
43
1.11
195300--195370
33
2.1
34
92
2
117
67
1
0
30
0.99
196047--196085
14
2.8
14
81
14
53
53
2
0
43
1.14
196571--196642
27
2.7
27
75
12
78
63
0
2
33
1.08
196561--196659
31
3.3
31
73
21
102
61
0
5
33
1.18
196823--196881
30
2.0
30
86
0
82
47
8
3
40
1.51
197956--197986
7
4.4
7
91
0
53
61
3
0
35
1.12
207146--207178
12
2.8
12
95
0
57
57
0
0
42
0.98
208173--208235
27
2.4
27
84
10
85
44
4
4
46
1.45
208173--208261
33
3.1
27
82
14
83
43
4
5
46
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
208200--208258
19
3.4
18
69
23
54
47
3
5
44
1.42
208191--208257
20
3.7
19
72
25
65
47
4
4
43
1.43
209012--209071
16
3.8
16
69
8
50
33
6
5
55
1.48
212267--212306
18
2.2
18
100
0
80
17
12
37
32
1.87
215638--215684
24
1.9
24
87
12
69
57
0
6
36
1.24
217817--217915
52
1.9
52
100
0
198
36
6
37
20
1.77
218475--218546
21
3.5
20
79
5
90
34
15
19
30
1.93
218475--218568
40
2.3
42
94
3
165
38
13
18
29
1.89
218613--218638
13
2.0
13
100
0
52
38
15
15
30
1.88

Tables:   1   2

The End!