Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2411
Parameters: 2 7 7 80 10 50 1000
Length:  206453

Tables:   1   2   

This is table  2  of  2  ( 157 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
157050--157082
3
11.0
3
100
0
66
33
0
0
66
0.92
159080--159158
21
4.2
20
74
19
64
55
1
1
41
1.16
159372--159524
76
2.0
77
91
3
247
22
22
15
40
1.90
165716--165837
35
3.5
35
87
0
181
48
13
21
16
1.81
166680--166718
20
2.0
20
89
0
60
20
7
23
48
1.75
178648--178690
16
2.7
15
82
10
50
62
2
0
34
1.08
178719--178769
20
2.5
20
90
0
84
64
5
1
27
1.27
182093--182127
3
11.7
3
100
0
70
34
0
0
65
0.93
182549--182574
12
2.2
12
100
0
52
26
7
0
65
1.20
183040--183089
24
2.1
24
100
0
100
20
24
8
48
1.76
185403--185450
20
2.4
20
86
6
62
39
2
0
58
1.10
186822--186948
55
2.3
55
81
6
152
36
7
11
45
1.67
187659--187717
26
2.3
26
87
0
91
30
20
5
44
1.73
187880--187965
42
2.0
43
82
6
104
58
3
0
38
1.15
187916--187975
30
1.9
30
83
6
75
58
1
0
40
1.08
188195--188228
9
3.8
9
88
11
52
44
0
5
50
1.26
188612--188644
3
11.0
3
100
0
66
33
0
0
66
0.92
189845--189930
42
2.1
41
82
2
100
39
13
16
30
1.87
191171--191215
20
2.2
20
84
11
56
51
15
13
20
1.76
191540--191585
21
2.2
21
84
7
58
43
13
6
36
1.69
191664--191802
53
2.6
53
93
1
224
38
17
17
26
1.92
191848--191923
21
3.4
22
85
7
100
28
22
11
36
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
192414--192480
37
1.9
35
88
11
102
32
11
25
29
1.92
194741--194795
21
2.6
21
88
0
74
18
20
0
61
1.34
196858--196932
19
3.7
20
76
15
82
37
20
13
29
1.90
196933--196973
20
2.0
20
85
0
55
39
2
29
29
1.70
197001--197025
13
1.9
13
100
0
50
36
16
16
32
1.90
198660--198774
35
3.3
33
79
16
119
55
2
2
39
1.27
198680--198784
16
6.1
17
71
17
67
56
1
1
40
1.21
198705--198771
17
4.0
17
74
20
61
55
0
1
43
1.09
198715--198818
49
2.1
49
81
13
117
57
0
1
40
1.10
203059--203106
24
2.0
24
88
8
71
68
2
2
27
1.11
204264--204301
20
1.9
20
88
0
58
47
7
5
39
1.55
204867--204910
2
22.0
2
85
0
52
47
2
4
45
1.35
204878--204924
18
2.6
18
86
0
67
36
2
8
53
1.44
204876--204924
20
2.5
20
82
0
62
36
2
8
53
1.43
205325--205386
21
3.1
20
77
9
56
56
32
11
0
1.35

Tables:   1   2

The End!