genome.fa.s243.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold243
Parameters: 2 7 7 80 10 50 1000
Length:  726772

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 482 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158132--158169	2	19.0	2	94	0	67	52	0	0	47	1.00
158558--158636	26	3.0	27	72	20	76	54	1	1	43	1.16
165335--165373	2	19.5	2	100	0	78	51	0	0	48	1.00
166076--166100	2	12.5	2	100	0	50	0	48	0	52	1.00
172782--172817	2	19.0	2	88	11	58	0	50	0	50	1.00
172817--172870	2	27.0	2	100	0	108	50	0	0	50	1.00
173112--173140	3	9.7	3	100	0	58	31	0	0	68	0.89
184215--184239	6	4.2	6	100	0	50	36	16	0	48	1.46
186734--186759	3	8.7	3	100	0	52	30	0	34	34	1.58
187958--188056	52	1.9	52	89	0	153	38	12	18	31	1.87
192508--192537	2	15.0	2	100	0	60	0	50	0	50	1.00
192537--192563	2	13.5	2	100	0	54	48	0	0	51	1.00
196079--196106	5	5.6	5	100	0	56	39	0	60	0	0.97
196501--196550	23	2.2	22	82	3	64	44	0	2	54	1.11
197312--197352	21	2.0	21	85	9	57	60	0	0	39	0.96
198047--198085	14	2.7	14	92	4	60	51	2	5	41	1.38
199227--199263	18	2.1	18	90	10	58	54	0	2	43	1.14
199505--199536	2	16.0	2	100	0	64	50	0	0	50	1.00
209080--209112	14	2.4	14	90	5	50	60	0	0	39	0.97
210113--210137	2	12.5	2	100	0	50	48	0	0	52	1.00
213606--213702	50	1.9	50	97	0	185	39	10	10	40	1.73
213885--213910	13	2.0	13	100	0	52	15	0	7	76	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
219343--219367	2	12.5	2	100	0	50	52	0	0	48	1.00
233248--233345	51	1.9	51	93	0	169	35	6	13	44	1.68
233249--233356	51	2.1	51	89	3	164	35	5	12	46	1.66
247384--247513	33	4.0	33	74	6	113	15	10	46	26	1.78
249024--249068	3	15.0	3	95	0	81	35	0	0	64	0.94
268419--268476	2	30.0	2	86	6	75	43	3	1	51	1.28
269854--269883	12	2.5	12	100	0	60	93	0	6	0	0.35
270958--270988	15	2.1	15	100	0	62	51	0	35	12	1.40
274690--274736	12	4.1	11	82	15	51	36	2	2	59	1.21
275258--275316	29	2.0	29	96	0	109	45	0	1	52	1.10
276052--276100	21	2.3	21	79	6	55	46	4	0	48	1.20
278284--278345	32	1.9	32	100	0	124	14	27	16	41	1.87
279985--280026	21	1.9	23	85	9	61	40	11	16	30	1.85
283592--283632	10	4.1	10	93	0	55	7	0	41	51	1.30
283600--283632	2	16.5	2	93	0	57	3	0	45	51	1.16
292789--292813	1	25.0	1	100	0	50	0	0	0	100	0.00
297009--297045	2	18.5	2	94	0	65	0	51	0	48	1.00
297620--297660	2	20.5	2	100	0	82	0	51	0	48	1.00
310989--311147	77	2.1	77	82	4	187	30	13	18	37	1.89
310989--311146	78	2.0	77	81	6	185	31	12	18	37	1.88
314077--314104	3	9.3	3	100	0	56	32	0	0	67	0.91
320404--320461	23	2.4	25	80	13	68	65	10	12	12	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320948--320973	2	13.0	2	100	0	52	50	0	0	50	1.00
321539--321587	20	2.4	20	80	12	55	53	2	0	44	1.12
330492--330557	18	3.8	18	72	25	61	39	0	3	57	1.14
330807--330831	7	3.6	7	100	0	50	44	0	0	56	0.99
331188--331297	11	10.4	11	70	14	63	63	0	0	35	1.01
331188--331302	28	4.1	30	73	23	99	63	0	0	35	1.01
331188--331246	17	3.4	17	75	15	50	64	0	0	35	0.94
331194--331290	6	16.2	6	69	19	51	62	1	0	36	1.02
341312--341336	4	6.2	4	100	0	50	52	0	0	48	1.00
341976--342005	2	15.0	2	100	0	60	50	0	0	50	1.00
342120--342160	2	20.5	2	100	0	82	51	0	0	48	1.00
342943--342974	3	10.7	3	100	0	64	34	0	0	65	0.93
343294--343346	19	2.9	18	71	15	54	39	1	0	58	1.09
343348--343398	22	2.4	22	90	3	77	49	0	0	50	1.00
347550--347581	16	2.1	15	94	5	55	37	0	0	62	0.95
347712--347744	5	6.8	5	93	6	59	81	0	18	0	0.68
348820--348884	33	2.0	33	85	11	89	40	0	0	60	0.97
348873--348898	13	2.0	13	100	0	52	53	0	0	46	1.00
349303--349338	2	18.0	2	88	11	56	2	50	0	47	1.15
350174--350207	2	17.0	2	100	0	68	50	0	0	50	1.00
351532--351570	18	2.2	19	90	9	64	43	0	0	56	0.99
351533--351579	17	2.7	18	80	9	53	46	2	0	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351657--351710	28	1.9	28	82	14	67	42	0	0	57	0.98
351681--351730	21	2.6	19	76	14	57	44	0	0	56	0.99
353117--353158	15	2.7	15	92	7	66	42	0	0	57	0.99
354505--354532	13	2.2	13	100	0	56	60	0	0	39	0.97
355527--355556	16	1.9	15	93	6	51	40	6	0	53	1.27
357863--357918	21	2.6	22	75	16	55	46	0	3	50	1.19
357895--357967	16	4.7	16	76	8	71	49	1	1	47	1.18
363321--363347	14	1.9	14	100	0	54	37	0	3	59	1.15
363443--363495	29	1.9	26	81	11	61	50	0	1	47	1.12
376997--377031	17	2.1	17	89	5	54	34	0	0	65	0.93
377007--377058	20	2.6	20	78	0	59	40	0	0	59	0.97
377548--377623	40	1.9	40	81	10	93	53	0	1	44	1.08
377588--377630	17	2.6	16	82	10	50	51	0	0	48	1.00
384007--384038	2	16.0	2	100	0	64	50	0	0	50	1.00
385487--385529	24	1.9	23	86	13	63	37	0	0	62	0.95
385506--385600	33	2.7	36	80	12	108	41	1	1	56	1.13
385592--385653	29	2.1	30	84	3	81	33	4	0	61	1.17
385592--385666	29	2.5	28	79	14	71	33	4	0	62	1.14
390410--390482	14	5.3	14	70	9	60	58	0	0	41	0.98
390409--390461	27	2.0	27	92	3	90	62	0	0	37	0.96
390409--390459	20	2.5	19	78	12	57	62	0	0	37	0.95
390446--390494	22	2.1	23	85	11	64	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391647--391707	13	4.9	12	77	16	54	52	0	0	47	1.00
391633--391707	26	2.9	26	80	11	84	50	0	0	49	1.00
391888--391927	19	2.0	21	85	9	57	67	2	0	30	1.04
392461--392546	2	43.5	2	79	11	61	43	2	1	53	1.21
392460--392569	57	1.9	58	81	9	136	45	1	2	50	1.26
395212--395242	3	10.3	3	100	0	62	32	67	0	0	0.91
397271--397388	4	29.5	4	89	0	137	50	9	0	40	1.35
400546--400598	27	2.0	27	92	0	88	30	16	11	41	1.84
401210--401570	181	2.0	181	98	0	704	21	16	21	40	1.91
410632--410660	2	14.5	2	100	0	58	51	0	0	48	1.00
414474--414503	15	2.0	15	93	0	51	63	3	0	33	1.11
414474--414520	17	2.8	17	81	12	53	61	2	2	34	1.20
415106--415160	28	2.0	27	83	16	69	43	1	0	54	1.10
415073--415155	36	2.3	35	80	10	89	39	1	0	59	1.05
415063--415157	37	2.5	39	78	13	101	41	1	1	56	1.13
415897--415943	23	2.0	25	83	8	62	57	0	0	42	0.98
415927--415978	18	3.1	17	76	20	56	53	0	1	44	1.11
416341--416387	23	2.1	21	85	14	60	42	0	0	57	0.98
417743--417789	5	9.2	5	80	13	51	65	0	0	34	0.93
417732--417787	14	3.9	14	80	17	53	66	0	0	33	0.92
417743--417839	30	3.3	29	76	15	94	61	0	1	37	1.03
417787--417829	18	2.3	20	88	11	65	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418872--418909	17	2.2	18	90	4	60	50	5	2	42	1.39
419302--419333	2	16.0	2	100	0	64	50	0	0	50	1.00
419523--419564	9	4.7	9	80	11	50	47	0	0	52	1.00
419681--419708	2	14.0	2	100	0	56	50	0	0	50	1.00
420512--420544	17	2.0	17	88	5	50	45	3	0	51	1.16
425312--425350	3	13.0	3	100	0	78	66	33	0	0	0.92
429687--429718	2	16.0	2	100	0	64	50	0	0	50	1.00
431826--431876	2	25.5	2	100	0	102	50	0	0	49	1.00
433576--433623	18	2.5	19	78	18	55	39	0	2	58	1.10
434954--434988	2	17.5	2	100	0	70	48	0	0	51	1.00

Tables:   1   2   3   4   5