genome.fa.s243.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold243
Parameters: 2 7 7 80 10 50 1000
Length:  726772

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 482 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
581882--581982	16	6.2	16	76	15	91	39	0	0	60	0.97
582282--582324	18	2.3	19	80	15	54	23	0	2	74	0.93
582536--582580	20	2.2	20	84	7	56	68	2	6	22	1.24
582798--582840	21	2.1	20	82	4	50	48	0	2	48	1.14
583319--583358	19	2.2	18	90	4	62	65	7	10	17	1.46
586885--586926	21	2.0	20	86	13	59	59	0	0	40	0.97
591025--591057	3	11.0	3	100	0	66	33	0	0	66	0.92
591670--591712	14	3.1	14	80	9	52	30	2	0	67	1.03
591670--591715	15	3.1	15	84	3	58	30	2	0	67	1.03
593077--593133	29	2.0	29	82	6	71	49	0	0	50	1.00
593444--593481	20	1.9	20	89	10	60	31	0	2	65	1.06
596109--596134	13	2.0	13	100	0	52	69	0	0	30	0.89
596496--596528	11	2.8	12	86	9	50	63	3	0	33	1.10
596834--596896	21	2.7	24	71	28	64	44	0	1	53	1.10
597128--597166	20	2.0	20	84	0	51	30	2	0	66	1.05
597229--597279	6	8.5	6	78	8	50	37	1	0	60	1.08
597420--597444	6	4.2	6	100	0	50	68	0	0	32	0.90
597402--597450	21	2.4	20	82	3	62	63	0	0	36	0.95
597647--597682	7	5.1	7	93	0	63	13	27	27	30	1.94
597806--597889	22	3.7	22	74	13	71	44	0	0	55	0.99
598308--598411	22	4.5	23	72	21	76	51	0	0	47	1.07
598308--598411	48	2.3	44	81	9	111	51	0	0	47	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
599451--599486	12	3.2	12	81	18	51	52	0	0	47	1.00
599440--599486	22	2.2	22	88	11	71	51	0	2	46	1.13
599448--599481	10	3.2	10	84	15	50	58	0	0	41	0.98
599666--599724	17	3.6	16	72	20	50	45	0	0	54	0.99
599725--599763	20	2.0	19	85	5	51	61	0	2	35	1.10
603615--603661	19	2.5	20	86	6	62	51	0	6	42	1.27
604046--604103	27	2.1	27	81	6	64	34	3	0	62	1.12
604071--604116	18	2.5	19	80	20	53	41	0	0	58	0.98
608389--608730	164	2.1	163	88	5	512	39	4	9	45	1.58
609259--609293	2	17.5	2	100	0	70	48	0	0	51	1.00
612643--612673	16	1.9	16	93	0	53	35	3	6	54	1.42
612892--613585	345	2.0	345	100	0	1388	37	12	16	33	1.87
614600--614628	2	14.5	2	100	0	58	51	0	0	48	1.00
614713--614743	2	15.5	2	93	0	53	51	0	3	45	1.17
614521--614749	113	2.0	114	98	1	442	39	8	16	35	1.79
618458--618488	16	1.9	16	93	0	53	35	3	6	54	1.42
625039--625157	42	2.8	42	92	0	184	8	45	2	43	1.47
625072--625147	12	6.9	11	75	15	52	9	48	2	39	1.49
625063--625148	24	3.8	24	72	17	85	10	45	2	41	1.51
625054--625124	18	3.6	18	69	20	52	9	42	2	45	1.52
631489--631543	24	2.3	23	78	9	58	38	5	16	40	1.72
632151--632177	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632943--632996	4	13.8	4	92	3	92	48	0	24	27	1.52
634986--635022	6	6.2	6	90	0	56	64	16	16	2	1.40
636217--636251	17	2.1	17	94	0	61	37	31	2	28	1.72
639579--639637	32	1.9	32	83	10	79	37	10	6	45	1.65
640195--640332	66	2.1	66	100	0	276	40	8	7	43	1.63
642209--642240	3	10.3	3	93	6	55	31	0	0	68	0.90
642481--642518	19	2.0	20	89	5	60	44	0	2	52	1.14
642480--642525	20	2.3	20	81	7	58	43	0	2	54	1.12
643638--643662	13	1.9	13	100	0	50	60	16	24	0	1.36
644775--644811	17	2.2	17	90	0	56	29	0	5	64	1.15
646273--646329	20	3.1	18	72	18	55	42	1	0	56	1.10
646274--646329	17	3.1	17	75	12	58	42	1	0	55	1.10
650445--650469	12	2.1	12	100	0	50	36	0	48	16	1.46
651006--651086	38	2.1	38	97	0	153	30	16	13	39	1.87
653535--653639	30	3.4	29	84	13	122	48	0	0	49	1.14
653636--653682	22	2.2	21	81	11	51	53	2	4	40	1.32
653745--653801	25	2.2	25	84	3	69	31	17	22	28	1.97
658798--658825	2	14.0	2	100	0	56	50	0	0	50	1.00
660074--660128	29	1.9	28	82	10	67	32	3	7	56	1.44
668025--668204	99	1.8	99	86	2	263	17	20	20	42	1.90
672663--672709	3	15.7	3	100	0	94	0	34	0	65	0.93
672828--672875	2	24.0	2	95	0	87	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
673587--673611	5	5.0	5	100	0	50	20	0	0	80	0.72
676233--676266	2	17.0	2	100	0	68	0	50	0	50	1.00
684578--684618	21	1.9	22	85	14	59	41	2	0	56	1.13
685103--685152	21	2.3	22	80	19	52	46	2	0	52	1.12
685092--685149	28	2.1	28	81	12	66	48	1	0	50	1.11
685159--685201	19	2.3	19	83	0	50	27	0	4	67	1.10
685233--685273	18	2.3	19	80	20	52	60	12	2	24	1.43
693146--693502	93	3.8	93	88	3	457	23	24	20	31	1.98
694174--694213	21	2.0	21	85	9	57	62	5	2	30	1.29
694269--694310	9	4.8	9	77	16	52	66	0	0	33	0.92
694260--694313	26	2.2	24	83	6	63	64	3	1	29	1.21
694944--695021	12	6.7	12	73	16	56	35	0	0	64	0.94
694957--695023	23	3.1	23	68	22	56	37	0	0	62	0.95
694936--695021	30	3.0	29	78	6	104	38	0	0	61	0.96
694930--694998	35	1.9	36	82	2	86	39	0	0	60	0.97
695110--695145	3	12.0	3	100	0	72	33	0	0	66	0.92
697191--697226	17	2.1	18	89	5	56	55	2	5	36	1.38
698465--698545	22	3.6	23	75	17	71	46	0	0	53	1.00
698464--698534	10	7.0	10	76	17	58	45	0	0	54	0.99
698465--698536	14	5.5	13	68	17	51	47	0	0	52	1.00
699523--699555	2	16.5	2	93	0	57	48	3	0	48	1.17
701084--701232	74	2.0	74	98	0	289	35	8	14	42	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
701588--701625	16	2.4	16	91	8	60	57	0	2	39	1.12
702526--702578	2	26.5	2	100	0	106	49	0	0	50	1.00
703262--703299	2	19.5	2	94	5	69	47	0	0	52	1.00
704483--704539	20	2.7	21	81	8	62	63	0	0	36	0.95
704494--704534	15	2.6	17	81	14	52	63	0	0	36	0.95
704677--704741	17	3.7	18	73	23	66	49	0	0	50	1.00
704944--704974	4	7.8	4	100	0	62	51	0	0	48	1.00
705295--705355	21	2.8	22	79	16	65	29	0	1	68	0.99
705406--705452	20	2.5	20	83	10	64	51	0	0	48	1.00
705649--705696	24	2.0	25	87	4	71	68	2	0	29	1.01
705768--705826	29	2.0	30	87	9	86	49	0	0	50	1.00
712572--712637	33	2.0	33	85	5	89	50	1	1	46	1.20
712608--712656	20	2.4	20	83	12	64	55	2	0	42	1.11
712608--712666	21	2.9	19	82	12	64	55	1	0	42	1.09
712712--712761	12	3.8	13	79	15	50	52	0	2	46	1.12
712970--713017	21	2.4	20	75	6	53	54	0	2	43	1.12
713642--713699	29	2.1	29	83	6	75	29	17	3	50	1.62
713800--713833	2	17.0	2	100	0	68	50	0	0	50	1.00
717473--717513	2	20.5	2	94	0	64	0	53	0	46	1.00
718412--718461	2	25.0	2	100	0	100	0	50	0	50	1.00
721462--721491	12	2.6	11	90	10	51	0	10	0	90	0.47
722064--722106	13	3.2	14	83	9	54	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
723038--723083	12	4.0	12	81	18	62	67	0	0	32	0.91
723038--723124	16	5.5	17	68	23	57	65	0	3	31	1.09
723090--723139	24	2.1	24	85	7	66	62	0	2	36	1.07
723038--723146	14	7.1	15	71	20	66	62	0	2	34	1.10
723102--723152	24	2.1	24	85	7	68	56	0	0	43	0.99
723122--723175	17	3.3	16	72	27	51	50	0	0	50	1.00
723553--723609	17	3.4	16	72	13	53	43	0	1	54	1.10
723869--723907	20	1.9	21	84	5	53	48	12	5	33	1.63
724615--724698	27	3.0	26	70	16	69	59	2	1	36	1.18
724899--724971	39	1.9	39	83	10	98	45	0	1	53	1.09

Tables:   1   2   3   4   5