genome.fa.s244.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold244
Parameters: 2 7 7 80 10 50 1000
Length:  271570

Tables:   1   2   

This is table  2  of  2  ( 175 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183617--183648	9	3.4	9	95	4	55	12	0	9	78	0.97
184232--185436	44	27.7	44	79	6	933	39	17	26	16	1.91
184212--185430	88	14.0	88	78	6	1036	39	16	26	16	1.91
185485--185511	6	4.5	6	100	0	54	0	14	0	85	0.61
199210--199308	52	1.9	51	85	2	135	11	26	8	54	1.63
200266--200302	17	2.2	17	90	0	56	40	8	21	29	1.82
200400--200456	24	2.4	23	82	8	78	7	5	7	80	1.01
200414--200507	9	11.0	8	72	22	50	15	1	7	75	1.08
200410--200477	27	2.6	27	86	9	88	11	2	8	76	1.12
200428--200507	18	4.5	18	72	15	60	17	1	6	75	1.08
204767--204817	20	2.3	23	77	19	72	43	3	9	43	1.56
204772--204814	20	2.2	20	95	0	77	41	4	11	41	1.62
205340--205384	23	2.0	23	100	0	90	48	11	13	26	1.75
206721--206754	2	17.5	2	87	6	52	50	2	0	47	1.16
207028--207075	24	2.0	24	88	8	71	43	2	0	54	1.12
207035--207082	19	2.5	20	83	12	57	41	2	0	56	1.11
207058--207088	14	2.2	14	94	0	53	32	0	0	67	0.91
207775--207805	16	1.9	16	93	0	53	9	6	0	83	0.79
209011--209053	19	2.2	20	87	4	61	69	11	0	18	1.17
209321--209357	12	3.2	12	81	11	51	54	0	0	45	1.00
211670--211731	23	2.7	23	78	12	72	61	0	6	32	1.21
211690--211726	12	3.2	12	85	14	51	67	0	5	27	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
211958--212013	20	2.9	19	84	5	85	46	12	0	41	1.42
213173--213199	2	13.5	2	100	0	54	0	48	0	51	1.00
213397--213437	3	13.7	3	100	0	82	0	31	0	68	0.90
213459--213555	33	3.0	32	89	4	149	10	10	20	58	1.60
219424--219524	32	3.1	32	74	7	105	43	32	11	11	1.78
219436--219528	16	5.8	16	76	0	78	43	30	13	12	1.82
226670--226731	27	2.2	28	80	2	72	20	3	3	72	1.13
227040--227091	24	2.2	23	83	16	70	59	0	0	40	0.97
228350--228396	22	2.1	23	84	11	62	46	2	4	46	1.34
228468--228507	18	2.2	18	90	0	62	37	5	5	52	1.45
229452--229500	22	2.2	21	79	10	53	46	0	2	51	1.12
229754--229836	30	2.9	31	81	16	83	65	0	0	34	0.93
235075--235124	2	25.0	2	79	0	55	48	6	4	42	1.46
236293--236327	6	5.8	6	96	0	61	20	0	11	68	1.20
236291--236335	18	2.5	18	85	0	63	26	0	11	62	1.29
240199--240242	23	1.9	23	95	0	79	29	13	13	43	1.83
240803--240873	34	2.1	34	97	0	133	45	5	18	30	1.72
241860--241913	22	2.5	21	75	6	54	42	3	1	51	1.30
242176--242218	22	2.0	22	95	0	77	53	0	0	46	1.00
242410--242484	30	2.5	30	80	0	96	40	5	16	38	1.71
242947--242997	12	4.2	12	82	2	57	80	3	9	5	1.01
250752--250870	51	2.3	51	85	0	166	31	29	10	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250791--251074	130	2.2	130	82	1	329	29	24	12	33	1.92
250803--250949	79	1.9	79	82	0	186	30	27	12	29	1.93
250882--250993	51	2.2	51	82	6	138	27	24	16	32	1.96
250970--251153	79	2.3	79	81	3	219	27	22	15	35	1.94
252939--253005	37	1.9	35	88	11	102	29	25	11	32	1.92
253489--253564	33	2.3	32	93	2	134	35	10	22	31	1.88
253439--253615	98	1.8	94	89	7	275	38	10	19	31	1.86
257033--257067	17	2.1	17	94	0	61	40	8	22	28	1.84
258552--258595	22	2.0	22	86	8	63	61	0	0	38	0.96
262836--262868	16	2.1	16	94	0	57	42	6	33	18	1.75
265910--265980	30	2.4	30	88	4	99	30	11	11	46	1.75

Tables:   1   2

The End!