genome.fa.s249.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold249
Parameters: 2 7 7 80 10 50 1000
Length:  858763

Tables:   1   2   3   4   

This is table  2  of  4  ( 466 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
216862--216904	16	2.7	16	82	10	52	53	0	0	46	1.00
216880--216945	28	2.4	27	82	7	80	53	0	0	46	1.00
216860--216965	43	2.4	43	80	10	110	53	0	0	45	1.06
217352--217404	23	2.3	23	75	12	63	64	5	5	24	1.38
217795--217866	19	3.8	20	76	12	71	59	4	2	33	1.31
217795--217893	19	5.1	18	74	15	65	60	3	2	34	1.23
217865--217917	21	2.5	20	80	17	54	64	0	0	35	0.94
217930--217973	11	3.8	11	77	11	52	4	11	0	84	0.77
217937--217981	24	2.0	24	86	8	67	6	13	2	77	1.05
218048--218078	13	2.3	14	94	5	55	0	12	0	87	0.55
218590--218620	5	6.4	5	96	3	55	0	19	0	80	0.71
222770--222799	15	2.0	15	93	0	51	76	6	0	16	0.99
226705--226730	2	13.0	2	100	0	52	50	0	0	50	1.00
228120--228245	30	4.6	27	66	22	68	42	0	0	56	1.10
228207--228263	25	2.2	26	81	12	73	42	1	0	56	1.10
231591--231620	2	15.0	2	100	0	60	50	0	0	50	1.00
231634--231713	41	2.0	41	82	9	101	65	1	2	31	1.14
237036--237065	2	15.0	2	100	0	60	50	0	0	50	1.00
239957--239988	2	16.0	2	100	0	64	50	0	0	50	1.00
240234--240261	3	9.3	3	100	0	56	67	0	0	32	0.91
240584--240640	17	3.6	17	72	15	59	40	0	1	57	1.09
240584--240643	30	1.9	33	86	10	90	40	0	1	58	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
240584--240677	30	3.1	31	80	11	88	40	2	2	55	1.24
240657--240715	31	1.9	31	86	3	84	30	5	0	64	1.15
242170--242197	3	9.3	3	100	0	56	67	0	0	32	0.91
244665--244713	22	2.3	21	83	13	64	46	0	0	53	1.00
244668--244721	22	2.4	21	82	11	63	48	0	0	51	1.00
244658--244762	36	2.9	36	72	19	94	41	2	0	55	1.15
244820--244851	15	2.0	17	88	11	50	68	0	0	31	0.90
245179--245212	2	17.5	2	87	6	52	55	0	44	0	0.99
245327--245357	2	15.5	2	100	0	62	0	48	0	51	1.00
252125--252174	20	2.5	21	83	6	59	42	0	2	56	1.11
264134--264166	13	2.7	13	90	9	52	69	0	0	30	0.88
264129--264300	90	1.9	89	81	10	208	55	4	0	39	1.25
266720--266760	21	2.0	20	90	4	64	34	0	4	60	1.18
266780--266854	17	4.4	17	73	8	53	37	0	1	61	1.05
266809--266881	33	2.2	33	82	4	85	28	2	0	68	1.03
270971--271178	104	2.0	104	91	0	337	24	16	16	42	1.88
275826--275884	30	2.0	30	83	6	75	30	1	5	62	1.26
276414--276440	2	13.5	2	100	0	54	51	0	0	48	1.00
284038--284098	30	2.0	30	100	0	122	21	26	22	29	1.99
285572--285712	77	1.9	76	86	5	205	26	5	6	60	1.43
298193--298242	25	2.0	25	88	7	75	30	8	0	62	1.24
298270--298305	17	2.1	17	90	10	56	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298414--298458	16	2.9	15	83	9	54	55	0	0	44	0.99
299670--299782	59	1.9	59	83	5	149	49	7	12	30	1.67
300546--300591	4	11.5	4	84	9	58	0	19	0	80	0.71
300535--300596	16	3.8	16	74	18	56	0	22	0	77	0.77
300527--300589	27	2.3	27	86	5	83	1	17	0	80	0.78
304305--304526	98	2.3	96	84	4	284	28	9	4	56	1.51
306995--307020	4	6.5	4	100	0	52	26	0	0	73	0.84
315572--315634	27	2.3	28	82	17	80	36	3	0	60	1.13
315575--315634	7	9.0	6	78	21	50	35	3	0	61	1.12
318652--318715	12	5.4	12	75	9	60	34	0	0	65	0.93
322255--322298	17	2.8	15	77	12	52	63	0	6	29	1.20
322285--322347	24	2.6	24	74	18	67	58	0	0	41	0.98
322477--322517	20	2.0	20	90	4	64	41	0	0	58	0.98
322474--322533	29	2.1	28	90	9	95	46	0	0	53	1.00
322916--322961	2	24.0	2	86	8	69	45	0	0	54	0.99
323423--323474	22	2.4	22	70	3	52	63	0	0	36	0.95
323453--323493	20	2.0	20	85	0	55	60	2	0	36	1.10
326550--326615	23	2.9	22	71	8	60	54	0	1	43	1.09
330336--330409	22	3.2	23	74	12	71	47	0	1	51	1.09
331229--331275	15	3.1	15	73	11	51	36	0	0	63	0.94
331237--331291	25	2.2	26	83	6	69	38	0	0	61	0.96
331235--331301	34	1.9	34	85	8	91	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331570--331613	17	2.5	18	85	10	56	45	0	0	54	0.99
333635--333674	2	20.0	2	100	0	80	50	0	0	50	1.00
338139--338171	2	17.0	2	87	6	50	45	0	3	51	1.16
338414--338459	15	3.0	15	83	3	56	45	0	2	52	1.13
338349--338440	30	3.1	29	73	9	78	53	1	3	42	1.24
338962--339017	22	2.5	24	75	16	57	57	0	1	41	1.09
344058--344085	14	2.0	14	100	0	56	28	35	7	28	1.84
345347--345376	2	15.0	2	100	0	60	50	50	0	0	1.00
366909--367001	18	5.2	18	75	13	75	44	0	0	55	0.99
366974--367018	20	2.3	19	92	3	72	51	0	0	48	1.00
367653--367808	84	1.8	86	88	2	244	34	15	14	35	1.88
372811--372845	17	2.0	18	88	5	54	60	0	0	40	0.97
377842--377873	2	16.0	2	100	0	64	50	0	50	0	1.00
380022--380067	20	2.3	20	85	7	58	50	4	0	45	1.21
380038--380078	20	2.0	20	86	9	57	51	0	2	46	1.14
380122--380175	12	4.3	13	79	18	53	27	1	0	70	0.98
383929--383981	15	3.6	15	79	5	72	33	0	0	66	0.92
383932--383991	8	8.0	8	71	25	51	36	0	0	63	0.95
383932--383991	29	2.0	31	90	6	97	36	0	0	63	0.95
383929--383990	23	2.8	23	76	14	67	35	0	0	64	0.94
383980--384031	16	3.1	16	77	20	52	59	0	1	38	1.08
384147--384209	19	3.3	19	73	6	56	42	0	1	55	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384197--384226	16	1.9	16	93	6	53	70	0	0	30	0.88
384348--384406	14	4.1	15	74	10	61	64	0	0	35	0.94
384348--384406	28	2.1	29	87	9	86	64	0	0	35	0.94
384348--384406	29	2.1	28	90	3	91	64	0	0	35	0.94
387688--387733	22	2.0	23	84	12	60	39	0	0	60	0.97
388736--388797	31	1.9	33	83	9	83	12	12	11	62	1.54
392379--392451	36	2.0	36	91	0	119	19	17	20	42	1.89
405409--405437	2	14.5	2	100	0	58	51	0	48	0	1.00
408627--408711	30	2.8	30	84	7	109	41	4	3	50	1.40
411376--411404	12	2.3	13	94	5	51	17	6	0	75	1.01
418922--418962	2	20.5	2	94	0	73	48	2	0	48	1.14
419879--419909	2	15.5	2	100	0	62	51	0	0	48	1.00
420631--420672	22	2.0	22	85	4	59	54	0	4	40	1.21
420998--421038	2	20.5	2	94	0	73	51	2	0	46	1.14
428436--428476	2	20.5	2	100	0	82	51	0	48	0	1.00
431606--431639	17	2.1	17	89	10	54	14	20	32	32	1.93
433440--433481	22	2.0	21	85	4	57	38	0	0	61	0.96
433505--433549	18	2.5	17	79	10	54	42	2	0	55	1.12
435539--435703	81	2.0	82	96	3	307	31	13	10	44	1.78
436322--436358	12	3.0	12	88	4	56	32	0	0	67	0.91
436314--436355	19	2.2	19	83	8	50	28	2	0	69	1.01
436337--436388	23	2.3	23	71	15	56	40	1	0	57	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437672--437779	5	21.4	5	69	16	53	60	1	0	37	1.14
437707--437762	25	2.3	24	80	17	62	62	1	0	35	1.06
437706--437807	8	11.2	9	71	16	61	58	1	0	38	1.16
439651--439687	18	2.1	18	90	10	58	43	0	0	56	0.99
440515--440581	33	2.1	33	83	8	84	56	0	0	43	0.99
442697--442768	26	2.7	27	78	18	73	43	0	0	56	0.99
443693--443758	30	2.3	30	82	15	77	46	0	0	53	1.00
446046--446086	13	2.9	14	82	10	57	68	2	0	29	1.03
451842--451876	2	17.5	2	93	0	61	48	0	0	51	1.00
460339--460393	26	2.2	26	87	6	78	30	23	16	29	1.96

Tables:   1   2   3   4