genome.fa.s2505.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2505
Parameters: 2 7 7 80 10 50 1000
Length:  232574

Tables:   1   2   

This is table  2  of  2  ( 172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174991--175454	28	16.8	28	83	7	578	29	29	17	24	1.97
178485--178533	27	1.9	25	84	12	64	24	26	18	30	1.98
179524--184187	158	29.5	155	64	12	835	35	14	18	31	1.91
179523--184426	476	10.3	476	87	2	6459	35	14	18	31	1.91
179523--184426	945	5.2	945	87	2	6431	35	14	18	31	1.91
185338--185379	20	2.2	19	86	4	57	23	21	11	42	1.86
189428--190071	157	4.1	158	69	13	428	33	19	12	34	1.89
193834--193858	13	1.9	13	100	0	50	36	16	16	32	1.90
193900--193964	33	2.0	33	90	3	105	40	10	12	36	1.78
194733--194859	67	1.9	68	85	1	175	39	12	24	23	1.89
194849--195321	43	10.0	52	76	16	263	32	17	24	25	1.97
194916--195332	43	9.1	43	80	12	467	31	17	25	25	1.97
194863--195332	92	5.1	92	94	1	796	31	17	25	25	1.97
195320--196088	33	23.5	32	91	4	1161	18	17	34	29	1.94
196072--196185	36	3.3	36	78	12	130	30	12	34	22	1.91
196158--196357	29	6.9	29	78	6	201	24	17	29	29	1.97
196156--196363	57	3.6	57	85	3	265	24	16	30	28	1.97
196156--196357	86	2.3	87	82	5	257	24	17	29	28	1.97
197797--197850	1	54.0	1	81	0	63	0	0	9	90	0.45
197785--197850	10	6.4	10	89	10	98	0	1	10	87	0.60
197798--197843	19	2.4	19	100	0	92	0	0	8	91	0.43
197786--197851	30	2.2	32	89	10	111	0	1	12	86	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197798--197850	19	2.8	18	94	2	79	0	0	9	90	0.45
202315--202614	159	1.9	157	79	8	331	31	17	14	36	1.90
201727--203691	476	4.2	472	81	5	2103	31	17	13	37	1.89
204067--204131	21	3.6	19	73	26	70	44	15	12	27	1.82
204085--204110	13	2.0	13	100	0	52	38	15	15	30	1.88
204067--204131	34	2.0	33	93	6	114	44	15	12	27	1.82
206330--206379	21	2.3	21	80	10	57	56	4	18	22	1.58
210376--210421	21	2.2	20	81	11	58	32	19	4	43	1.71
212774--212838	21	3.6	19	73	26	70	44	15	12	27	1.82
212792--212817	13	2.0	13	100	0	52	38	15	15	30	1.88
212774--212838	34	2.0	33	93	6	114	44	15	12	27	1.82
214331--218597	475	9.1	476	80	7	4590	30	17	13	37	1.89
217868--220287	158	15.3	159	67	11	820	30	18	13	37	1.90
218314--218808	157	3.2	155	69	13	382	30	19	14	35	1.92
217798--219388	788	2.0	792	85	2	2184	30	18	14	36	1.91
216763--220551	158	24.0	159	66	11	786	30	18	13	36	1.90
218588--220551	475	4.1	472	83	3	2424	31	18	13	36	1.90
218588--220551	948	2.1	949	85	2	2669	31	18	13	36	1.90
220563--220632	14	5.0	14	92	0	122	20	15	20	44	1.87
221983--222053	1	71.0	1	74	0	61	0	1	11	87	0.61
221983--222053	13	5.5	13	80	13	85	0	1	11	87	0.61
221983--222050	18	3.7	18	88	4	91	0	1	11	86	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
221983--222053	23	3.2	22	81	16	85	0	1	11	87	0.61
226167--226223	13	3.9	13	72	24	51	35	12	17	35	1.87
226147--226247	32	3.1	32	94	1	175	33	10	18	36	1.86
226145--226242	19	5.8	18	69	28	81	32	11	18	37	1.86
226285--226312	13	2.2	13	100	0	56	28	14	17	39	1.89
226298--226446	52	2.9	51	89	6	203	34	18	17	30	1.94
226618--226665	19	2.5	19	96	0	87	33	12	16	37	1.86
226686--226835	52	2.9	51	85	5	178	34	18	17	30	1.94

Tables:   1   2

The End!