genome.fa.s2536.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2536
Parameters: 2 7 7 80 10 50 1000
Length:  227166

Tables:   1   2   

This is table  2  of  2  ( 177 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157600--157725	48	3.0	39	81	10	126	26	25	21	26	1.99
157552--157822	87	3.0	88	85	8	346	25	26	18	29	1.98
157639--158228	49	11.7	49	82	5	669	23	25	17	32	1.97
157639--158228	101	5.8	100	88	2	810	23	25	17	32	1.97
158863--158892	14	2.1	14	100	0	60	43	16	13	26	1.85
158951--159043	19	4.7	19	69	7	69	41	13	12	31	1.83
158953--159043	40	2.3	40	92	0	155	42	14	12	30	1.82
159096--159121	13	2.0	13	100	0	52	30	15	15	38	1.88
160669--160745	38	2.0	38	97	0	145	15	27	20	36	1.93
162324--162362	20	1.9	21	89	5	62	20	10	10	58	1.59
168202--168271	28	2.5	28	86	4	88	27	15	31	25	1.96
167920--168250	79	4.2	79	80	3	326	33	13	23	28	1.93
168262--168358	51	1.9	51	89	4	151	34	7	24	34	1.83
172614--172638	13	1.9	13	100	0	50	36	16	16	32	1.90
173631--173671	21	2.0	20	90	4	64	19	12	17	51	1.76
174948--175098	69	2.2	69	91	2	241	24	23	11	39	1.89
175017--175220	96	2.1	96	86	0	291	25	24	14	35	1.93
175959--175984	13	2.0	13	100	0	52	30	15	15	38	1.88
176689--176732	21	2.1	21	83	8	54	25	31	4	38	1.76
178370--178416	21	2.3	21	76	23	55	42	4	19	34	1.70
178537--178562	13	2.0	13	100	0	52	38	15	15	30	1.88
181022--181047	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181003--181065	32	2.0	32	87	6	92	28	15	15	39	1.89
183422--183468	21	2.3	21	76	23	55	42	4	19	34	1.70
183589--183627	13	3.0	13	96	0	69	35	15	17	30	1.91
183614--183691	20	3.7	20	76	15	75	42	15	16	25	1.87
185698--185728	15	2.1	15	93	0	53	12	22	16	48	1.80
187532--187576	21	2.1	21	84	8	56	22	20	4	53	1.63
189975--190044	26	2.7	26	77	2	68	70	10	14	5	1.33
191309--192082	34	22.9	33	80	12	722	20	33	12	33	1.91
191434--191485	27	1.9	27	96	0	95	23	38	17	21	1.93
191343--192082	141	5.4	139	84	8	890	20	33	12	33	1.90
191341--192077	280	2.7	276	86	8	982	20	33	12	32	1.91
192086--192155	33	2.1	33	89	5	115	25	40	17	17	1.90
192153--192616	49	9.7	48	82	9	553	24	25	17	31	1.97
192254--192616	92	3.9	92	97	1	654	24	25	18	31	1.97
192152--192616	184	2.5	187	92	4	783	24	25	17	31	1.97
192530--192913	67	6.7	55	73	14	273	24	23	14	37	1.93
192530--192924	171	2.3	171	95	1	700	24	24	14	36	1.93
193724--193790	33	2.0	33	88	0	98	34	11	13	40	1.81
193744--193768	13	1.9	13	100	0	50	36	16	16	32	1.90
193833--193857	13	1.9	13	100	0	50	32	16	16	36	1.90
193866--193986	52	2.3	52	97	0	224	34	18	18	28	1.94
196913--197051	69	2.0	69	100	0	278	25	33	18	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
200699--200729	15	2.1	15	93	0	53	12	22	16	48	1.80
202532--202576	21	2.1	21	84	8	56	22	20	4	53	1.63
204794--204819	13	2.0	13	100	0	52	30	15	15	38	1.88
207033--207098	35	1.9	34	93	3	114	31	13	24	30	1.94
215971--215995	12	2.1	12	100	0	50	32	16	20	32	1.94
217307--217434	54	2.4	53	79	11	145	42	0	0	56	1.05
217386--217443	27	2.1	27	81	6	64	39	1	1	56	1.19
217529--217563	17	2.1	17	88	0	52	57	8	25	8	1.57
217842--217890	17	3.0	16	82	11	55	63	0	2	34	1.06
217892--217942	21	2.4	21	84	9	68	31	1	0	66	1.03
217891--217942	22	2.3	23	77	16	63	32	1	0	65	1.04
218164--218215	20	2.5	20	78	9	50	34	7	3	53	1.48
220905--220956	22	2.5	20	78	9	61	21	9	7	61	1.51

Tables:   1   2

The End!