genome.fa.s257.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold257
Parameters: 2 7 7 80 10 50 1000
Length:  204476

Tables:   1   2   

This is table  2  of  2  ( 167 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143474--143547	28	2.6	28	91	0	112	27	31	18	22	1.98
143293--143560	107	2.5	107	78	3	263	27	27	14	29	1.95
150910--150974	20	3.6	20	69	26	72	32	21	10	35	1.88
150910--150977	33	2.1	33	97	0	127	30	20	11	36	1.89
153450--153503	20	2.7	20	100	0	108	25	14	14	44	1.84
153489--153515	13	2.1	13	100	0	54	29	14	14	40	1.86
153501--153556	19	2.9	19	86	5	76	33	10	17	37	1.85
153501--153555	20	2.8	20	88	2	76	32	10	18	38	1.85
155780--155813	17	1.9	18	94	5	61	55	0	0	44	0.99
156148--156199	24	2.2	24	100	0	104	51	7	7	32	1.59
157720--157776	21	2.8	20	84	5	78	38	15	14	31	1.87
157812--157879	19	3.9	19	78	21	85	35	11	14	38	1.83
157814--157876	32	2.0	32	96	0	117	34	12	15	36	1.86
157833--157857	13	1.9	13	100	0	50	36	16	16	32	1.90
157919--157944	13	2.0	13	100	0	52	30	15	15	38	1.88
157899--157965	33	2.0	33	88	0	98	25	14	16	43	1.86
160418--160493	27	2.8	28	85	2	100	25	34	19	21	1.96
160313--160664	51	6.7	52	70	13	211	29	25	12	31	1.93
160685--160761	28	2.7	29	88	4	104	24	33	18	23	1.96
160308--160810	268	1.9	262	87	3	729	29	26	12	31	1.93
160632--160835	107	1.9	109	81	12	249	29	24	14	31	1.94
162959--163045	22	3.9	22	77	10	70	4	5	11	78	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165746--165778	15	2.2	15	94	0	57	42	0	9	48	1.35
171035--171106	20	3.6	20	76	0	90	33	12	13	40	1.83
182814--182839	13	2.0	13	100	0	52	30	15	15	38	1.88
182824--182880	19	2.9	19	86	2	78	31	19	17	31	1.95
182775--182879	52	2.0	52	83	9	133	29	20	16	34	1.94
184484--184508	3	8.3	3	100	0	50	32	0	36	32	1.58
191529--191555	13	2.1	13	100	0	54	29	7	14	48	1.71
192525--192879	186	1.9	185	80	8	416	37	8	11	41	1.72
194154--194934	166	4.8	166	79	5	818	48	9	11	29	1.71
194312--194930	322	1.9	322	84	2	823	49	9	11	29	1.70
194634--194996	166	2.2	165	85	3	471	50	9	10	29	1.67
195937--196264	84	3.9	84	80	0	352	42	13	25	17	1.87
196524--197778	44	28.8	44	68	10	319	40	14	23	22	1.90
196537--197733	88	13.7	88	68	12	372	40	14	23	22	1.90
196852--197195	173	2.0	173	82	3	424	38	12	24	24	1.90
196852--197101	129	1.9	130	81	8	303	39	12	24	24	1.90
196614--197862	132	9.5	131	76	6	802	40	13	23	22	1.90
196714--197950	44	28.3	43	69	8	320	40	13	23	22	1.90
198114--198158	22	2.0	22	100	0	90	35	13	13	37	1.84
198328--198357	3	10.0	3	100	0	60	33	0	0	66	0.92
199175--199318	76	1.9	76	82	4	184	44	11	18	25	1.84
203180--203236	19	2.9	19	86	2	78	31	14	19	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
203281--203311	13	2.4	13	94	0	53	35	16	12	35	1.87
203265--203333	33	2.1	33	86	5	95	30	13	20	36	1.90
203422--203450	10	2.7	11	94	5	51	58	27	10	3	1.47

Tables:   1   2

The End!