genome.fa.s261.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold261
Parameters: 2 7 7 80 10 50 1000
Length:  193966

Tables:   1   2   

This is table  2  of  2  ( 168 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131716--132524	28	28.8	28	81	6	557	25	14	31	29	1.95
131733--132257	85	6.2	83	80	6	322	24	15	29	30	1.95
131745--132257	113	4.5	112	79	6	405	24	14	29	30	1.95
132160--133032	82	10.6	81	83	6	940	27	13	32	26	1.94
132160--133032	27	31.9	27	84	4	982	27	13	32	26	1.94
132160--133032	55	15.9	54	84	5	993	27	13	32	26	1.94
141575--141740	20	7.8	20	73	18	129	40	12	16	30	1.85
141525--141772	91	2.7	91	94	0	433	41	12	16	29	1.85
141684--141822	71	2.0	71	95	0	251	41	13	15	29	1.85
141757--141811	20	2.8	20	80	0	65	40	14	10	34	1.81
143293--143322	13	2.3	13	100	0	60	30	16	13	40	1.87
145463--145625	51	3.2	51	88	0	227	27	25	14	31	1.95
145403--145764	181	2.0	182	84	2	478	29	25	12	32	1.92
145646--145762	51	2.3	50	91	4	189	31	26	11	29	1.92
145744--145820	28	2.8	28	80	4	93	23	29	18	28	1.97
145512--145786	130	2.1	132	85	4	398	29	26	13	31	1.94
145772--146023	79	3.2	78	78	6	256	28	23	13	34	1.93
145696--145893	107	1.8	106	81	6	247	28	25	13	32	1.94
145570--146340	316	2.4	317	87	1	1084	28	24	12	33	1.92
145961--146075	51	2.3	51	89	0	167	31	23	13	32	1.93
146061--146136	28	2.7	27	88	8	100	21	30	21	27	1.98
145613--146183	158	3.6	158	72	10	511	28	24	13	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146092--146321	79	2.9	79	77	9	236	28	24	13	34	1.92
146013--146207	107	1.8	107	82	2	248	27	25	14	32	1.94
146092--146348	79	3.2	79	77	11	197	28	24	13	33	1.93
147944--147968	13	1.9	13	100	0	50	36	16	16	32	1.90
147924--147992	32	2.1	33	94	2	122	34	10	18	36	1.85
147924--147987	19	3.6	19	72	25	68	34	10	18	35	1.86
148050--148178	52	2.5	52	89	0	204	35	15	17	31	1.91
155871--156735	42	20.6	41	68	12	246	45	12	22	19	1.84
155865--156691	85	9.9	85	78	7	753	45	12	22	19	1.84
155828--156691	168	5.1	168	78	6	765	45	12	22	19	1.84
157114--157326	92	2.3	92	86	4	299	30	16	25	28	1.97
157118--157354	92	2.6	91	83	4	291	30	14	26	28	1.95
158910--158939	13	2.3	13	94	0	51	3	6	6	83	0.90
163815--163879	20	3.6	20	73	26	81	33	18	10	36	1.86
163835--163859	13	1.9	13	100	0	50	40	16	12	32	1.84
163812--163890	33	2.4	33	100	0	158	34	17	12	35	1.88
163875--163931	19	3.0	20	80	12	66	33	15	17	33	1.92
172724--172776	20	2.7	20	85	2	72	32	15	16	35	1.90
178415--178447	5	6.6	5	100	0	66	60	0	0	39	0.97
181216--181241	13	2.0	13	100	0	52	38	15	15	30	1.88
185297--185327	15	2.1	15	93	0	53	48	16	22	12	1.80
187543--187588	21	2.2	20	81	11	58	32	19	4	43	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189110--189134	13	1.9	13	100	0	50	36	16	16	32	1.90
189090--189156	33	2.0	33	88	0	98	32	11	14	40	1.83
189197--189221	13	1.9	13	100	0	50	32	16	16	36	1.90
192908--192933	13	2.0	13	100	0	52	30	15	15	38	1.88

Tables:   1   2

The End!