genome.fa.s2639.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2639
Parameters: 2 7 7 80 10 50 1000
Length:  39059

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1705--1730	13	2.0	13	100	0	52	38	15	15	30	1.88
1782--1835	21	2.7	20	77	8	65	37	14	12	35	1.85
2513--3311	49	16.8	51	71	14	446	29	18	26	25	1.98
2619--3311	49	14.8	49	73	14	530	29	18	26	25	1.98
2562--3311	88	7.9	101	77	11	499	29	18	26	25	1.98
2864--3245	39	8.7	39	72	16	170	28	19	26	25	1.99
2815--3163	88	4.0	88	90	1	549	27	19	26	26	1.99
2816--3163	175	2.0	175	95	0	624	27	19	25	26	1.99
3123--3306	51	3.8	49	77	12	195	30	18	26	23	1.98
3173--3317	43	3.2	43	75	11	164	31	18	26	24	1.98
3123--3317	92	2.1	93	88	3	286	31	18	26	23	1.97
3340--3839	30	16.2	29	76	11	358	33	14	29	22	1.94
3399--3841	62	7.2	61	82	7	484	34	14	29	21	1.93
5563--5872	165	1.9	168	85	6	436	31	9	7	50	1.63
5908--6446	155	3.5	154	76	7	403	25	18	18	37	1.93
6167--6446	156	1.8	155	86	5	413	23	17	20	38	1.93
7661--7813	43	3.6	43	83	3	191	37	20	26	15	1.92
7756--7844	43	2.1	43	80	0	97	34	17	28	19	1.95
7934--8072	44	3.2	44	75	12	133	36	12	28	21	1.91
10482--10681	79	2.5	79	79	4	233	34	15	23	27	1.94
10557--10880	130	2.5	130	80	3	314	35	13	23	27	1.92
10639--10749	51	2.2	51	80	3	125	34	12	25	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10772--10895	50	2.5	50	86	4	169	37	11	23	28	1.89
12645--12684	21	1.9	21	85	10	55	35	12	32	20	1.90
13065--13115	20	2.5	20	96	0	93	45	9	13	31	1.76
13764--14106	61	5.6	60	85	4	425	30	18	25	25	1.98
13764--14106	62	5.6	62	85	3	435	30	18	25	25	1.98
13764--14106	123	2.8	123	90	0	499	30	18	25	25	1.98
13885--14513	285	2.2	285	86	2	879	29	17	27	26	1.98
14146--14414	62	4.4	62	81	2	265	27	17	27	27	1.98
14332--14524	100	1.9	100	81	4	228	29	17	27	25	1.97
22585--22677	46	2.0	46	97	0	177	26	25	11	35	1.91
27787--28164	79	4.8	79	78	6	349	35	14	22	27	1.93
27789--28164	158	2.4	157	83	5	445	35	14	22	27	1.93
28119--28227	49	2.2	50	93	1	184	38	9	24	27	1.86
30527--30577	20	2.5	20	87	0	75	43	7	17	31	1.78
33896--33960	32	2.0	32	96	0	121	30	21	24	23	1.99
35616--35657	12	3.3	12	84	12	57	83	4	9	2	0.88
35616--35671	26	2.0	27	86	10	78	75	7	10	7	1.20
35778--38066	763	3.0	762	99	0	4483	36	21	14	27	1.92
38543--39039	32	15.9	32	76	10	413	29	34	17	17	1.93
38543--39041	61	8.0	62	80	10	470	29	34	17	18	1.93

Tables:   1

The End!