genome.fa.s2644.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2644
Parameters: 2 7 7 80 10 50 1000
Length:  180694

Tables:   1   2   

This is table  2  of  2  ( 144 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157414--157539	52	2.4	52	95	0	225	26	19	17	35	1.94
157422--157557	52	2.6	52	91	2	193	29	18	18	33	1.95
157635--157659	13	1.9	13	100	0	50	32	16	16	36	1.90
157616--157678	32	2.0	32	96	0	117	33	19	14	33	1.91
157614--157679	19	3.8	19	77	22	81	34	18	13	33	1.90
162630--162660	13	2.4	13	94	0	53	35	12	16	35	1.87
162610--162676	33	2.0	33	88	11	102	32	17	13	35	1.89
162705--162761	19	2.9	19	89	5	78	35	17	15	31	1.92
162746--162772	13	2.1	13	100	0	54	40	14	14	29	1.86
162727--162791	32	2.0	32	90	3	103	40	16	16	26	1.90
163568--163636	33	2.1	33	83	5	86	37	15	11	34	1.84
163665--163720	19	2.9	19	89	2	76	35	17	16	30	1.92
164083--164121	20	2.0	19	90	5	60	38	23	7	30	1.83
164131--164168	13	2.9	13	96	0	67	31	13	15	39	1.86
164257--164282	13	2.0	13	100	0	52	38	15	15	30	1.88
167496--167521	13	2.0	13	100	0	52	30	15	15	38	1.88
167476--167539	33	2.0	32	84	3	83	28	12	18	40	1.87
167621--167645	13	1.9	13	100	0	50	36	16	16	32	1.90
169638--169682	20	2.1	22	88	8	67	4	28	48	17	1.66
169952--169993	22	2.0	21	86	13	61	40	0	21	38	1.53
170125--170162	13	2.9	13	92	0	58	36	18	13	31	1.89
170360--170398	8	4.8	8	90	3	60	61	23	0	15	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173863--173909	23	2.1	22	85	14	62	27	17	6	48	1.71
176412--176452	21	2.0	22	90	9	68	43	14	9	31	1.78

Tables:   1   2

The End!