genome.fa.s2658.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2658
Parameters: 2 7 7 80 10 50 1000
Length:  141595

Tables:   1   

This is table  1  of  1  ( 102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327--369	16	2.6	16	88	3	59	39	0	0	60	0.97
1682--1717	2	18.0	2	100	0	72	50	0	0	50	1.00
1920--1962	17	2.4	19	80	7	54	46	0	13	39	1.44
3657--3709	23	2.3	22	83	6	61	28	1	1	67	1.11
3695--3739	15	2.9	16	83	3	65	42	0	0	57	0.98
4069--4112	22	2.0	22	82	8	54	34	0	4	61	1.16
5472--5543	16	4.8	16	77	13	73	38	0	0	61	0.96
5470--5543	23	3.3	22	77	15	64	40	0	0	59	0.97
5479--5539	19	3.3	19	74	17	58	39	0	0	60	0.97
5479--5556	26	2.9	27	77	17	81	38	0	0	61	0.96
5564--5612	17	2.9	17	78	6	55	44	0	6	48	1.27
6434--6556	61	2.0	61	90	0	192	60	2	4	32	1.31
6678--6708	2	15.5	2	100	0	62	48	0	0	51	1.00
7179--7218	20	2.0	20	85	0	53	32	0	0	67	0.91
7284--7334	17	3.1	16	81	10	59	47	1	0	50	1.12
8268--8297	3	10.0	3	92	0	51	30	0	3	66	1.07
11227--11269	2	21.5	2	100	0	86	51	0	0	48	1.00
12855--12899	22	2.1	22	87	4	65	57	0	0	42	0.98
16845--16903	27	2.1	27	84	9	73	50	1	1	45	1.21
17715--17765	13	3.6	14	73	21	52	56	1	0	41	1.10
20955--21000	21	2.1	22	84	4	58	19	30	19	30	1.97
23387--23455	27	2.6	26	81	6	75	53	10	2	33	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23789--23854	19	3.3	20	73	21	59	53	0	3	43	1.16
23765--23825	29	2.1	30	81	9	72	47	0	1	50	1.10
23780--23869	40	2.3	40	79	9	105	46	0	2	51	1.13
24173--24227	8	7.1	8	76	12	53	21	0	0	78	0.76
24176--24224	6	7.8	6	80	15	55	20	0	0	79	0.73
24178--24225	13	3.8	13	84	13	64	20	0	0	79	0.74
24217--24270	29	1.9	27	88	7	81	38	0	1	59	1.08
25623--25649	2	13.5	2	100	0	54	51	0	0	48	1.00
25880--25935	19	2.9	18	79	10	58	16	5	0	78	0.92
25897--25952	23	2.3	25	87	6	80	23	3	0	73	0.99
25950--26041	20	4.2	20	65	25	53	47	1	1	50	1.15
25933--26112	31	5.8	31	75	17	153	45	1	1	52	1.15
26013--26135	27	4.5	26	72	13	88	45	0	0	53	1.06
30887--30915	2	14.5	2	100	0	58	48	0	0	51	1.00
34526--34621	47	2.0	47	89	0	147	32	23	15	28	1.95
34737--34783	12	3.9	12	75	8	51	46	2	0	51	1.13
34762--34830	32	2.2	31	84	5	86	42	0	0	57	0.98
35272--35326	23	2.3	24	76	17	62	47	0	1	50	1.11
37716--38174	50	9.2	50	90	0	684	29	20	18	31	1.96
41414--41438	13	1.9	13	100	0	50	36	16	16	32	1.90
41504--41528	13	1.9	13	100	0	50	32	16	16	36	1.90
41537--41661	52	2.4	52	95	0	223	36	18	17	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46161--46569	50	8.2	50	93	0	665	29	21	19	30	1.97
46738--46792	24	2.4	23	81	6	67	34	0	1	63	1.05
46742--46887	11	11.8	12	65	21	61	38	0	1	60	1.06
46757--46859	38	2.7	38	72	17	95	38	0	1	59	1.09
47840--47901	18	3.6	18	76	8	56	67	0	0	32	0.91
48752--48791	20	2.0	20	85	9	55	82	2	2	12	0.87
48980--49054	27	2.7	27	79	2	87	46	16	12	25	1.81
55389--55441	26	2.1	26	89	6	83	49	0	0	50	1.00
57095--57328	116	2.0	116	99	0	459	34	14	23	27	1.93
62015--62089	20	3.8	20	80	3	80	40	12	13	34	1.81
62012--62089	40	2.0	39	87	2	111	39	12	12	34	1.82
62618--63262	32	20.2	32	95	0	1114	15	17	34	31	1.92
64486--64523	14	2.8	14	88	11	53	0	2	7	89	0.57
64488--64523	18	1.9	19	94	5	65	0	2	8	88	0.59
70392--70430	21	1.9	20	94	5	69	23	15	20	41	1.90
78518--78592	20	3.8	20	80	3	80	40	12	13	34	1.81
78515--78592	40	2.0	39	87	2	111	39	12	12	34	1.82
80319--80349	16	1.9	16	93	0	53	29	0	0	70	0.87
81637--81681	20	2.2	21	84	11	58	57	0	4	37	1.19
82434--82464	7	4.6	7	92	8	55	54	0	0	45	0.99
82663--82716	25	2.1	25	83	13	65	38	7	1	51	1.41
83002--83041	16	2.6	16	88	4	55	32	15	2	50	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84737--84779	20	2.2	20	100	0	86	34	34	0	30	1.58
94181--94256	20	3.8	19	82	6	98	32	11	13	42	1.80
94242--94318	31	2.5	31	97	0	145	25	20	11	41	1.86
96808--96842	14	2.4	15	90	4	54	28	2	8	60	1.41
100671--100700	2	15.0	2	100	0	60	50	0	0	50	1.00
100538--100864	169	1.9	168	96	0	609	40	12	11	36	1.79
101432--101505	28	2.5	30	76	10	82	52	0	0	47	1.00
101724--101813	32	2.8	32	80	9	85	43	0	0	56	0.99
101762--101873	31	3.6	29	80	17	95	41	0	0	58	1.04
101718--101842	16	8.0	15	66	22	62	41	0	0	58	0.98
101815--101864	23	2.1	24	85	3	66	34	0	0	66	0.92
102114--102157	3	14.7	3	100	0	88	68	0	0	31	0.90
102226--102293	15	4.4	15	72	10	57	57	4	0	38	1.19
104559--104619	17	3.5	17	78	12	54	52	1	0	45	1.10
107195--107286	45	2.1	45	85	6	125	52	10	8	28	1.66
110612--110686	26	2.9	26	79	13	68	49	0	1	49	1.09
110614--110672	14	4.4	14	72	16	54	50	0	0	49	1.00
112363--112406	23	1.9	23	95	0	79	38	9	11	40	1.73
113035--113080	23	2.1	21	84	15	58	58	4	0	36	1.18
115652--115700	20	2.4	21	80	10	57	34	0	0	65	0.93
117753--117821	22	3.2	22	66	26	58	47	1	4	46	1.31
117759--117821	19	3.1	19	69	22	56	47	1	4	46	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118632--118675	23	1.9	23	95	0	79	38	9	11	40	1.73
124762--124852	29	3.1	29	76	9	87	40	3	14	41	1.62
125355--125392	2	19.0	2	100	0	76	50	0	0	50	1.00
125935--125985	19	2.6	19	81	3	57	64	1	0	33	1.05
126256--126328	35	2.1	35	92	0	119	36	9	8	45	1.67
127949--127975	2	13.5	2	100	0	54	48	0	0	51	1.00
133259--133356	42	2.3	42	84	3	117	44	16	6	32	1.72
133259--133367	42	2.6	40	79	13	103	44	15	5	33	1.70
133350--133453	43	2.4	43	78	9	122	39	12	10	37	1.78
133740--133770	2	15.5	2	100	0	62	48	0	0	51	1.00
133858--133909	21	2.5	21	87	9	79	38	1	1	57	1.21
133925--133985	29	2.1	30	84	3	79	45	1	11	40	1.50
136017--136060	16	2.5	19	75	24	60	45	11	6	36	1.67
136026--136060	16	2.2	16	100	0	70	42	11	5	40	1.65

Tables:   1

The End!