genome.fa.s2674.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2674
Parameters: 2 7 7 80 10 50 1000
Length:  49480

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1789--1870	41	2.0	41	83	9	105	32	20	7	39	1.80
3241--3297	22	2.5	23	82	2	71	36	7	15	40	1.75
6934--7145	20	9.6	20	67	23	104	42	11	15	30	1.82
6934--7160	91	2.5	91	89	5	352	43	11	15	29	1.82
7842--8053	48	4.5	48	89	1	263	33	18	26	20	1.96
7936--8010	25	3.2	24	66	14	66	32	18	28	21	1.97
7952--8025	24	3.2	23	66	14	62	35	16	28	20	1.94
7959--8028	21	3.1	22	69	15	70	32	15	28	22	1.95
7832--8058	94	2.4	92	81	5	258	33	18	27	20	1.96
8166--11994	28	136.0	28	82	4	3348	24	16	27	30	1.97
8166--13367	56	91.9	56	81	6	5450	24	16	27	30	1.97
8166--13384	84	61.5	84	81	6	5448	24	16	27	30	1.97
11956--12033	39	2.0	39	92	0	129	23	21	28	26	1.99
11995--13384	28	48.8	29	77	10	1162	23	16	28	30	1.97
11928--12061	67	2.0	67	89	5	209	23	19	28	28	1.98
12388--12465	39	2.0	39	92	0	129	23	21	28	26	1.99
12848--12925	39	2.0	39	92	0	129	23	21	28	26	1.99
12888--13453	56	10.1	56	86	4	698	23	17	29	29	1.97
12898--13475	28	20.6	28	86	5	197	23	16	29	29	1.96
13394--13472	27	2.9	27	90	1	113	25	13	30	30	1.94
14812--14872	32	2.0	30	83	6	77	9	11	6	72	1.29
24892--25016	27	4.9	24	74	13	97	21	7	24	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24894--24959	27	2.4	27	90	7	98	22	7	22	46	1.77
24949--25018	24	2.8	25	87	6	90	22	8	24	44	1.81
29488--29610	28	4.7	26	79	6	83	21	6	26	46	1.75
29488--29558	27	2.6	27	86	6	90	22	5	23	47	1.72
29543--29612	24	2.8	25	89	6	99	21	8	25	44	1.80
31289--31319	15	2.1	15	100	0	62	35	25	6	32	1.82
35045--35126	41	2.0	41	88	4	121	34	19	8	37	1.82
36527--36579	22	2.3	23	90	3	81	35	5	16	41	1.73
40223--40438	20	9.7	20	71	20	144	42	11	16	30	1.83
40223--40449	91	2.5	91	94	1	384	42	11	16	29	1.83
41135--41312	48	3.8	48	92	1	270	34	18	26	20	1.95
41253--41321	21	3.0	22	68	15	68	33	15	27	23	1.95
41135--41342	48	4.4	47	90	1	260	34	18	25	21	1.96
41229--41303	25	3.2	25	66	14	68	33	18	26	21	1.96
41135--41312	94	1.9	95	88	2	268	34	18	26	20	1.95
41460--48529	56	125.7	56	80	7	6816	24	16	27	31	1.97
41460--48529	28	251.4	28	79	7	6164	24	16	27	31	1.97
45390--45467	39	2.0	39	94	0	138	24	21	26	26	1.99
47151--47227	38	2.0	39	92	2	129	24	22	25	27	2.00
47124--47255	66	2.0	66	84	8	171	24	18	28	28	1.98
48614--49463	27	30.4	27	65	17	127	29	28	16	25	1.97
49031--49086	26	2.1	27	87	6	80	28	35	17	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49158--49302	55	2.7	55	73	18	126	28	28	16	25	1.97
49162--49424	28	9.6	26	70	14	115	28	27	17	26	1.98
49166--49479	27	11.5	27	69	16	159	28	28	17	25	1.98

Tables:   1

The End!