genome.fa.s2740.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2740
Parameters: 2 7 7 80 10 50 1000
Length:  449113

Tables:   1   2   

This is table  2  of  2  ( 191 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
233203--233617	207	2.0	207	95	0	749	21	18	15	43	1.87
236703--248025	159	71.5	157	67	11	3532	36	13	18	31	1.90
236592--248040	475	24.1	475	86	2	14747	36	13	18	31	1.90
244091--244115	12	2.1	12	100	0	50	16	32	16	36	1.90
249641--249722	33	2.5	33	91	0	128	45	0	42	12	1.41
249650--249722	21	3.3	22	76	16	71	42	0	43	13	1.44
249651--249717	12	5.9	11	77	18	66	40	0	46	13	1.43
249671--249751	42	1.9	42	92	0	135	41	1	45	11	1.47
249653--249731	12	6.9	12	73	20	55	43	0	43	13	1.44
256209--273512	159	109.4	158	66	12	644	36	14	18	30	1.91
254905--275573	475	43.6	475	86	1	27687	36	14	18	30	1.91
254913--275573	949	21.8	949	92	0	32462	36	14	18	30	1.91
277456--277539	37	2.3	37	100	0	168	44	21	10	23	1.84
280582--280689	21	5.3	18	66	30	58	10	48	1	39	1.48
280585--280703	42	2.8	42	93	0	202	9	47	1	42	1.45
280618--280693	12	6.9	11	75	15	52	9	48	2	39	1.49
282317--295395	475	27.6	476	85	1	17504	35	14	19	31	1.91
282317--295396	949	13.8	950	95	0	22251	35	14	19	31	1.91
297028--297094	21	3.2	21	70	16	57	44	2	41	10	1.54
297004--297121	42	2.8	42	88	0	173	44	2	44	8	1.48
303036--303102	21	3.2	21	70	16	57	44	2	41	10	1.54
303012--303129	42	2.8	42	88	0	173	44	2	44	8	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307203--314650	475	15.7	475	85	1	9540	36	14	18	30	1.91
307353--314650	159	46.2	159	65	11	1553	36	14	18	30	1.91
314438--314867	217	2.0	216	89	1	655	35	15	18	30	1.92
314645--318714	950	4.3	950	91	0	6023	36	14	18	31	1.91
314647--318714	475	8.6	474	85	1	5338	36	14	18	31	1.91
319560--319598	15	2.6	15	79	0	51	82	2	12	2	0.89
320345--320420	12	6.9	11	75	15	52	39	2	48	9	1.49
320344--320429	24	3.8	24	72	17	85	41	2	45	10	1.51
320335--320453	42	2.8	42	90	0	184	43	2	45	8	1.47
325432--358163	475	68.9	475	86	1	43882	36	14	18	30	1.91
326478--337288	317	34.2	311	65	15	1879	36	14	18	30	1.91
358133--364970	475	14.4	475	87	1	9411	36	14	19	30	1.91
364940--377006	950	12.7	947	89	1	15645	35	14	18	30	1.91
362776--371331	317	27.0	313	65	14	1126	35	14	18	30	1.91
364940--377022	476	25.4	475	86	1	15806	35	14	18	31	1.91
376355--377641	634	2.0	635	86	1	1767	35	14	18	31	1.91
364955--383856	950	19.9	940	84	5	10126	35	14	18	31	1.91
376539--377829	634	2.0	632	81	4	1485	36	13	19	31	1.91
376976--383857	476	14.5	475	86	1	8952	35	14	18	31	1.91
384301--384769	235	2.0	234	98	0	902	20	18	16	44	1.87
384919--384966	19	2.8	17	85	14	71	79	6	8	6	1.07
385725--385834	42	2.6	42	92	0	184	41	2	46	9	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391756--393328	159	9.9	159	65	13	509	36	14	18	30	1.91
391508--393628	475	4.5	475	85	2	2800	36	13	19	30	1.90
391508--393645	954	2.2	949	88	2	3165	36	13	19	30	1.90
393431--393846	204	2.0	205	86	1	584	37	11	18	32	1.86
393636--416052	475	46.6	475	76	8	14367	35	14	19	31	1.91
393636--400909	159	45.9	156	66	13	1619	36	13	18	31	1.90
405920--416031	159	63.8	154	66	13	2414	36	13	19	30	1.91
417660--417778	42	2.8	42	90	0	184	42	2	47	8	1.47
423080--423577	252	2.0	252	86	3	689	36	14	19	29	1.91
423328--427746	476	9.3	476	87	1	5808	35	14	18	30	1.91
424525--426129	158	10.1	157	66	13	513	36	14	18	30	1.91
423328--427746	951	4.6	951	87	1	5912	35	14	18	30	1.91
427564--427899	158	2.1	158	88	1	485	34	15	17	32	1.92
427091--428370	633	2.0	632	84	1	1672	35	14	17	32	1.91
427722--434367	476	14.0	475	85	2	8284	35	14	18	31	1.90
423418--434327	159	68.8	156	66	12	2740	35	14	18	31	1.91
435327--435359	14	2.3	15	94	5	59	75	9	9	6	1.18
436103--436185	33	2.5	32	80	3	94	46	1	39	12	1.49
436135--436225	42	2.2	43	88	4	132	42	0	45	12	1.41
440652--440723	12	6.5	11	78	16	62	40	1	44	13	1.53
440672--440703	9	3.6	9	91	0	55	43	0	43	12	1.42
440681--440752	33	2.2	33	89	0	108	41	2	44	11	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
440651--440730	42	1.9	42	92	0	133	42	1	42	13	1.52
446962--447080	42	2.8	42	92	0	193	8	46	2	42	1.47
446995--447070	12	6.9	11	75	15	52	9	48	2	39	1.49
446986--447071	24	3.8	24	72	17	85	10	45	2	41	1.51
446977--447047	18	3.6	18	69	20	52	9	43	2	43	1.52

Tables:   1   2

The End!