genome.fa.s2753.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2753
Parameters: 2 7 7 80 10 50 1000
Length:  197694

Tables:   1   2   

This is table  2  of  2  ( 145 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140069--140274	78	2.6	79	84	3	263	27	26	12	34	1.92
140209--140323	51	2.3	51	81	3	133	31	27	10	30	1.90
140256--140429	78	2.2	78	84	6	219	27	25	13	33	1.93
140139--140372	129	1.8	129	84	1	326	29	26	11	32	1.91
152269--152294	8	3.2	8	100	0	52	53	11	11	23	1.69
153002--153042	22	1.9	22	90	5	66	24	0	2	73	0.96
153003--153051	21	2.3	22	82	10	57	22	0	6	71	1.08
152988--153202	111	2.0	109	92	3	360	27	7	7	57	1.53
153118--153167	21	2.3	20	81	18	57	20	2	8	70	1.23
161090--161215	20	5.8	20	72	17	99	30	16	11	41	1.83
168051--168122	22	3.2	23	70	16	62	69	8	13	8	1.36
169412--169531	27	4.4	27	87	3	168	25	29	14	31	1.94
169407--169519	55	2.1	55	93	0	190	23	28	14	34	1.93
169407--169588	55	3.3	55	80	2	157	26	30	14	27	1.95
169527--169861	32	11.0	32	83	6	344	31	30	18	20	1.96
169522--169861	92	3.7	92	82	8	410	31	30	18	20	1.96
169555--169874	155	2.1	156	86	5	467	31	29	18	20	1.97
169404--170106	28	24.2	28	80	8	388	28	28	17	25	1.98
170210--170332	49	2.5	49	94	1	221	19	27	17	34	1.95
171905--171943	20	1.9	21	89	5	62	23	10	10	56	1.63
176160--177028	433	2.0	433	97	0	1623	29	23	20	27	1.99
177081--177357	97	2.8	95	81	6	322	27	22	12	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181504--181555	20	2.7	20	88	8	72	40	17	13	28	1.87
187688--187726	13	3.0	13	92	0	69	30	17	15	35	1.91
196614--196650	16	2.3	16	86	13	58	89	5	5	0	0.60

Tables:   1   2

The End!