genome.fa.s278.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold278
Parameters: 2 7 7 80 10 50 1000
Length:  230431

Tables:   1   2   

This is table  2  of  2  ( 144 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
192452--192532	29	2.8	29	100	0	162	23	13	14	48	1.80
192924--194142	67	18.5	67	72	10	606	19	21	13	45	1.84
193415--193655	133	1.8	131	82	5	306	19	24	12	44	1.84
193415--193800	132	2.9	134	79	7	344	19	22	12	45	1.83
193392--194066	199	3.4	196	78	7	591	20	21	12	46	1.82
195848--196110	78	3.3	80	82	3	282	36	12	22	28	1.91
197709--197748	20	2.0	20	95	0	71	22	17	15	45	1.85
198114--198194	39	2.0	40	95	4	146	17	19	7	55	1.65
199829--199854	13	2.0	13	100	0	52	30	15	15	38	1.88
199893--199968	21	3.7	21	82	3	109	28	18	11	40	1.86
199913--199986	20	3.7	20	81	3	103	31	20	13	35	1.91
199893--199986	41	2.3	41	100	0	188	29	19	12	38	1.89
202438--202475	13	2.9	13	96	0	67	31	15	18	34	1.92
202464--202540	20	3.6	20	74	19	66	44	15	14	25	1.84
202680--202711	8	4.0	8	100	0	64	62	25	0	12	1.30
206399--206443	21	2.1	21	84	8	56	22	20	4	53	1.63
208652--208677	13	2.0	13	100	0	52	30	15	15	38	1.88
218534--218602	20	3.5	20	80	7	77	40	11	15	31	1.84
219539--219967	28	14.8	29	85	5	437	24	16	29	29	1.96
224944--224968	13	1.9	13	100	0	50	32	16	16	36	1.90
225050--225101	20	2.7	20	90	3	79	38	21	11	28	1.88
226135--226159	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226147--226199	20	2.6	21	84	3	72	39	15	16	28	1.89
226251--226275	13	1.9	13	100	0	50	32	16	16	36	1.90

Tables:   1   2

The End!