Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold300
Parameters: 2 7 7 80 10 50 1000
Length:  363256

Tables:   1   2   3   

This is table  3  of  3  ( 270 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
330713--330749
13
2.6
15
79
16
51
48
0
2
48
1.15
330716--330748
13
2.5
13
95
0
57
48
0
3
48
1.17
331537--331579
18
2.3
19
88
4
61
25
0
4
69
1.07
331837--331907
18
4.1
17
78
10
63
38
0
0
61
0.96
331833--331908
17
4.3
18
75
18
61
39
0
0
60
0.97
333054--333101
23
2.0
24
88
8
71
54
2
0
43
1.12
333429--333476
14
3.2
14
78
16
51
45
0
2
52
1.12
333603--333639
2
18.5
2
100
0
74
51
0
48
0
1.00
337791--337817
2
13.5
2
100
0
54
48
0
0
51
1.00
337968--337998
15
2.1
15
94
5
55
12
9
0
77
0.99
338058--338118
19
3.3
18
78
13
61
52
1
0
45
1.10
344944--344979
2
18.5
2
88
5
56
47
2
0
50
1.15
346543--346573
16
1.9
16
93
0
53
48
0
3
48
1.17
348435--348503
30
2.3
29
76
11
68
34
1
1
62
1.13
351276--351332
2
28.5
2
92
0
96
49
3
0
47
1.18
352827--352885
2
29.5
2
100
0
118
50
0
0
49
1.00
354059--354100
22
1.9
22
85
0
57
52
7
2
38
1.42
355767--355811
3
15.0
3
95
0
81
64
2
0
33
1.06
360875--360902
4
7.0
4
100
0
56
25
0
0
75
0.81
361105--361155
20
2.5
20
77
0
57
58
1
0
39
1.09
361294--361356
24
2.6
25
85
12
87
41
3
3
52
1.33
361295--361369
14
5.2
14
70
4
51
38
2
2
56
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
361748--361801
16
3.4
15
76
19
56
53
0
1
44
1.11
362055--362119
23
2.8
23
83
4
69
47
0
0
52
1.00
362040--362113
19
3.8
19
73
18
55
48
1
0
50
1.09
362065--362114
19
2.7
19
79
11
59
48
0
0
52
1.00
362076--362134
23
2.6
23
78
2
57
50
0
1
47
1.11
362535--362581
25
1.9
25
91
4
78
44
0
0
55
0.99
363114--363166
27
2.0
27
81
7
63
33
1
3
60
1.26
363199--363241
18
2.4
18
84
0
50
27
0
4
67
1.10

Tables:   1   2   3

The End!