genome.fa.s310.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold310
Parameters: 2 7 7 80 10 50 1000
Length:  103541

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5821--5975	79	2.0	79	90	0	247	45	10	14	29	1.77
11748--11782	18	1.9	18	94	0	61	40	2	2	54	1.30
13812--13880	28	2.4	28	80	7	77	33	2	1	62	1.19
13889--13931	19	2.2	19	84	16	52	62	2	0	34	1.08
13949--14013	28	2.3	29	81	2	69	52	3	1	43	1.26
14214--14251	19	2.0	19	89	0	58	81	0	15	2	0.80
14559--14668	16	6.8	17	69	27	71	40	0	0	58	1.04
14584--14643	8	7.0	8	73	19	50	38	1	0	60	1.07
14570--14657	20	4.2	20	76	13	88	39	1	0	59	1.05
14591--14668	35	2.2	35	84	11	97	42	1	0	56	1.07
14600--14666	18	3.8	18	77	18	68	43	0	0	56	0.99
14803--14835	5	6.6	5	92	0	57	15	0	3	81	0.80
16440--16479	17	2.4	16	84	8	53	0	17	5	77	0.94
20019--20263	121	2.0	121	96	0	454	31	18	19	30	1.96
20848--20884	12	3.1	12	100	0	74	8	16	24	51	1.71
21985--22022	14	2.7	14	91	0	58	36	5	13	44	1.66
25914--25969	27	2.0	28	86	10	80	51	3	0	44	1.18
28637--29413	370	2.1	359	81	6	886	39	10	9	39	1.73
31236--31281	24	1.9	24	90	0	74	43	28	6	21	1.77
31238--31332	28	3.7	26	74	13	72	47	24	6	22	1.74
35426--35474	21	2.3	21	96	0	89	26	8	34	30	1.86
35860--35934	27	2.8	27	88	6	100	48	22	5	24	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37004--37049	23	2.0	24	82	4	58	26	10	23	39	1.88
39656--39691	18	1.9	18	88	5	54	52	0	2	44	1.15
39831--39904	28	2.6	29	75	14	73	52	6	1	39	1.36
41092--41143	21	2.5	21	93	0	86	30	9	19	40	1.83
42730--42781	2	26.0	2	100	0	104	50	0	0	50	1.00
43959--43994	13	2.7	13	91	4	54	66	8	5	19	1.38
44456--44483	14	2.0	14	100	0	56	35	0	0	64	0.94
44452--44488	14	2.5	15	83	16	51	37	0	0	62	0.96
44516--44577	18	3.3	19	82	12	74	38	1	0	59	1.07
44509--44577	21	3.4	21	81	15	83	37	2	0	59	1.12
44470--44577	39	2.8	39	75	22	104	39	2	0	56	1.20
44558--44591	15	2.3	15	89	0	50	29	0	5	64	1.17
44516--44584	18	3.7	18	78	14	59	37	1	2	57	1.22
44640--45577	67	14.3	66	89	3	1275	36	15	14	33	1.88
44637--45577	400	2.4	400	88	4	1409	36	15	14	33	1.88
45327--45566	66	3.8	59	77	13	214	38	15	13	32	1.87
46636--46690	11	4.6	12	78	14	60	61	0	0	38	0.96
47517--47564	25	1.9	25	83	8	62	31	0	0	68	0.90
48225--48255	13	2.3	14	94	5	55	29	0	0	70	0.87
49084--49126	11	4.0	11	81	3	52	58	0	0	41	0.98
53247--53346	30	3.4	29	78	10	105	39	10	3	48	1.52
53829--53903	28	2.6	29	80	14	93	32	0	1	66	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53842--53890	20	2.5	19	75	18	55	32	0	0	67	0.91
58438--58467	15	2.0	15	93	0	51	50	0	0	50	1.00
58710--58748	20	2.0	20	84	0	51	53	10	5	30	1.56
58751--58781	8	3.9	8	100	0	62	61	0	0	38	0.96
59445--59475	14	2.2	14	94	0	53	61	0	9	29	1.28
59557--59592	2	18.0	2	100	0	72	50	0	0	50	1.00
59654--59688	17	2.1	17	88	0	52	48	5	20	25	1.71
59748--59785	11	3.5	11	78	7	51	31	0	0	68	0.90
59751--59793	20	2.1	21	86	4	61	30	0	2	67	1.03
61291--61356	33	2.0	33	90	0	105	25	18	28	27	1.98
61359--61425	27	2.5	27	95	0	116	29	7	16	46	1.74
62793--62830	17	2.2	17	100	0	76	23	0	36	39	1.55
65882--65954	34	2.1	34	97	0	137	21	20	28	28	1.98
65955--66024	27	2.6	27	81	4	79	31	5	20	42	1.75
68142--68175	17	1.9	18	94	5	61	47	5	20	26	1.73
68907--68952	21	2.1	22	84	4	58	19	30	19	30	1.97
70229--70253	13	1.9	13	100	0	50	36	16	16	32	1.90
70208--70291	19	4.7	19	77	18	99	32	11	19	36	1.88
70334--70358	13	1.9	13	100	0	50	32	16	16	36	1.90
78488--78520	18	1.9	17	88	11	50	21	0	15	63	1.30
80139--80194	27	2.0	28	83	10	71	50	1	0	48	1.11
80869--80919	24	2.1	24	100	0	102	39	11	11	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82723--83480	365	2.1	364	81	6	885	40	9	9	40	1.71
82788--83565	365	2.1	362	80	6	869	39	10	8	41	1.70
83164--84381	351	3.5	349	77	10	938	41	10	9	38	1.72
86219--86264	23	2.0	24	82	4	58	26	10	23	39	1.88
89739--89768	13	2.2	13	94	5	51	0	16	0	83	0.65
90670--90916	127	1.9	127	83	3	318	38	11	14	34	1.83
92728--92757	11	2.7	11	89	0	51	40	0	0	60	0.97
92728--92774	16	2.9	16	84	12	60	38	0	4	57	1.18
92735--92805	28	2.5	29	82	8	76	40	0	4	54	1.20
92764--92875	40	2.8	41	75	15	92	37	2	4	55	1.34
93315--93368	23	2.3	23	93	0	90	44	1	3	50	1.30
98730--98798	27	2.5	27	81	6	68	28	4	18	47	1.68
103303--103392	28	3.4	27	80	8	87	25	7	21	45	1.78

Tables:   1

The End!