genome.fa.s315.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold315
Parameters: 2 7 7 80 10 50 1000
Length:  271854

Tables:   1   2   

This is table  2  of  2  ( 175 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169810--169928	42	2.8	42	92	0	193	8	46	2	42	1.47
169843--169918	12	6.9	11	75	15	52	9	48	2	39	1.49
169834--169919	24	3.8	24	72	17	85	10	45	2	41	1.51
169825--169895	18	3.6	18	69	20	52	9	43	2	43	1.52
171959--172077	42	2.8	42	89	0	184	42	2	45	9	1.49
180419--180489	12	6.5	11	76	15	51	39	2	47	9	1.51
180415--180522	42	2.6	42	93	0	189	40	2	47	9	1.50
189547--189631	31	2.5	36	74	20	99	18	24	28	28	1.98
189795--189866	28	2.5	27	76	10	72	31	15	27	25	1.95
189861--189923	29	2.2	29	88	0	90	20	19	30	30	1.97
189869--189939	29	2.5	28	81	6	88	18	15	30	35	1.92
190024--190122	28	3.5	28	77	10	103	29	16	25	29	1.96
190024--190153	29	4.5	29	75	12	99	29	17	24	28	1.97
190084--190382	31	9.4	31	77	10	241	25	19	25	30	1.98
190316--190486	35	4.8	34	76	11	121	28	19	22	30	1.98
190124--190492	31	10.9	36	72	14	172	24	19	24	31	1.98
201230--201382	31	5.0	31	82	11	181	28	33	17	20	1.96
201283--201433	63	2.4	64	90	2	232	29	33	15	21	1.94
201152--201438	29	9.6	29	76	12	181	29	30	16	23	1.96
201151--201480	29	11.0	30	76	11	155	29	28	15	26	1.96
201230--201441	94	2.3	93	85	9	272	29	32	16	21	1.95
201392--201481	30	3.0	30	77	6	92	31	24	13	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
201472--201731	31	8.5	31	82	8	293	28	26	21	23	1.99
201606--201655	25	2.0	25	92	0	82	32	26	26	16	1.96
201472--201715	87	2.7	88	84	6	285	27	26	22	23	1.99
201786--201987	80	2.5	80	80	4	203	26	27	16	29	1.97
201968--202191	52	4.3	51	78	6	166	26	26	16	30	1.96
202021--202251	51	4.5	52	76	2	243	26	25	16	32	1.96
202019--202253	103	2.3	103	82	3	276	26	25	16	31	1.96
201959--202251	155	1.9	155	82	5	369	26	25	16	31	1.96
202471--202558	43	2.0	43	95	0	158	29	34	23	12	1.92
204718--204752	12	2.9	12	84	16	54	40	0	48	11	1.39
204721--204766	12	3.9	12	81	13	51	43	0	43	13	1.43
213091--213136	25	1.9	25	82	8	60	4	13	13	69	1.33
214703--214771	21	3.3	21	77	6	68	79	4	11	4	1.01
220347--220449	9	12.1	9	71	12	83	13	44	0	41	1.44
220352--220458	12	9.9	12	75	19	71	13	45	0	41	1.43
220322--220455	42	3.2	42	90	2	207	12	44	0	41	1.48
220406--220467	30	2.1	30	84	6	81	11	45	0	43	1.40
224305--224413	54	2.0	54	100	0	218	27	23	11	37	1.89
225669--225715	23	2.0	23	84	8	60	23	27	21	27	1.99
228490--228732	102	2.4	101	84	4	312	28	27	11	32	1.92
231623--231698	12	6.9	11	75	15	52	39	2	48	9	1.49
231622--231707	24	3.8	24	72	17	85	41	2	45	10	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
231613--231731	42	2.8	42	92	0	193	42	2	46	8	1.47
241929--242936	159	6.3	159	74	8	649	38	14	16	30	1.89
245913--245988	12	6.9	11	77	15	61	39	1	48	10	1.46
245912--245997	24	3.8	24	73	17	85	41	1	45	11	1.48
245933--245993	9	7.1	9	72	10	56	42	1	44	11	1.50
245903--246021	42	2.8	42	90	0	184	42	1	46	9	1.46
245957--246002	12	3.9	12	81	13	51	43	0	43	13	1.43
255592--256268	158	4.3	157	79	4	646	36	14	18	30	1.91
255695--256268	317	1.8	316	82	1	736	35	13	17	32	1.89
256916--256978	23	2.6	24	75	5	65	63	7	1	26	1.31
266131--266206	38	2.0	38	89	0	116	26	21	31	21	1.98

Tables:   1   2

The End!