genome.fa.s335.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold335
Parameters: 2 7 7 80 10 50 1000
Length:  202493

Tables:   1   2   

This is table  2  of  2  ( 213 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105728--105845	28	4.2	27	71	12	69	52	1	0	45	1.10
105772--105812	18	2.3	19	84	16	52	58	4	0	36	1.20
105817--105854	18	2.1	18	85	9	51	50	0	0	50	1.00
106668--106707	21	2.0	20	85	5	53	32	7	0	60	1.25
106926--106965	2	20.0	2	100	0	80	50	0	0	50	1.00
107858--107892	2	17.5	2	100	0	70	51	0	0	48	1.00
108107--108151	16	2.6	16	83	13	54	42	0	4	53	1.21
108065--108129	29	2.3	26	80	14	76	36	3	1	58	1.23
108117--108178	32	1.9	33	90	3	99	41	0	4	53	1.22
111963--112010	23	2.2	22	88	7	71	56	0	0	43	0.99
112024--112072	24	1.9	27	88	12	77	51	0	2	46	1.12
112467--112573	32	3.2	32	71	11	99	40	4	5	49	1.47
113358--113384	2	13.5	2	100	0	54	51	0	0	48	1.00
115660--115742	22	3.6	22	71	19	71	49	0	0	50	1.00
117185--117226	18	2.3	18	84	8	50	54	9	0	35	1.33
117259--117296	17	2.2	17	95	0	67	44	0	0	55	0.99
117764--117902	16	8.8	16	65	26	66	58	0	0	41	1.03
117774--117862	18	5.1	19	69	23	61	56	1	0	42	1.06
117764--117929	10	16.7	10	66	25	77	57	0	0	42	1.03
117850--117929	6	13.3	6	70	19	51	58	0	0	41	0.98
117790--117934	32	4.6	31	73	15	95	55	0	0	44	0.99
117818--117920	18	5.3	18	73	18	73	59	0	0	40	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117875--117924	23	2.2	23	88	0	73	58	0	0	42	0.98
118213--118293	33	2.3	36	80	18	91	62	0	1	35	1.03
118239--118284	20	2.3	21	82	10	53	65	0	0	34	0.93
118241--118322	17	4.7	17	71	18	53	58	1	0	40	1.06
118236--118322	34	2.7	31	81	12	79	60	1	0	37	1.04
121483--121520	2	19.0	2	100	0	76	50	0	0	50	1.00
127294--127332	2	19.5	2	100	0	78	0	48	0	51	1.00
127332--127368	2	18.5	2	100	0	74	48	0	0	51	1.00
128037--128105	21	3.3	21	68	13	61	47	10	0	42	1.37
128282--128362	16	5.1	16	72	15	69	38	2	4	54	1.35
130084--130125	2	21.0	2	100	0	84	50	0	0	50	1.00
137582--137651	24	2.8	24	71	4	68	50	0	0	50	1.00
138438--138463	2	13.0	2	100	0	52	50	0	0	50	1.00
143368--143420	4	14.2	4	78	11	51	81	0	18	0	0.70
143374--143421	15	3.2	15	82	5	62	83	0	16	0	0.65
143372--143420	25	1.9	25	91	4	80	81	0	18	0	0.69
143296--143561	135	2.0	133	88	9	398	49	9	18	22	1.75
143509--143549	13	3.1	13	83	16	57	82	0	17	0	0.66
143505--143556	18	3.0	17	79	20	63	80	0	19	0	0.71
144527--144572	11	4.2	11	77	0	56	82	0	15	2	0.76
144522--144572	8	6.2	8	76	13	50	80	0	17	1	0.81
144843--144903	24	2.6	25	75	19	67	19	0	14	65	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145611--145651	17	2.5	17	84	7	59	43	0	0	56	0.99
146118--146193	34	2.2	34	84	9	93	44	1	1	52	1.17
146098--146168	29	2.6	28	80	12	69	40	1	0	57	1.07
146555--146589	12	2.8	13	87	12	56	25	31	2	40	1.70
146703--146738	16	2.2	16	90	0	54	55	0	0	44	0.99
147565--147612	15	3.3	14	83	13	53	64	0	0	35	0.94
148815--148854	21	1.9	21	85	10	55	37	12	7	42	1.71
150100--150159	19	3.0	20	76	9	61	43	13	13	30	1.82
150188--150225	20	1.9	20	94	0	67	36	7	10	44	1.68
153384--153478	29	3.1	32	80	8	99	63	0	0	36	0.95
153615--153654	14	2.9	14	85	7	55	62	0	0	37	0.95
154975--154999	2	12.5	2	100	0	50	48	0	0	52	1.00
155154--155272	34	3.5	33	80	4	157	42	26	5	25	1.77
162218--162275	30	2.0	29	86	3	80	39	0	5	55	1.22
163449--163502	26	2.1	26	83	13	67	40	5	3	50	1.44
163784--163822	16	2.3	16	82	8	51	48	0	10	41	1.37
164348--164442	31	3.1	31	77	18	83	46	1	0	52	1.07
164774--164800	14	1.9	14	100	0	54	51	3	0	44	1.19
165133--165176	21	2.1	21	82	0	52	43	0	0	56	0.99
166023--166106	23	3.6	23	71	14	66	46	1	0	52	1.08
166031--166076	13	3.7	13	77	19	53	52	0	0	47	1.00
168430--168471	21	2.0	20	86	4	57	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168966--170041	240	4.4	247	78	9	903	44	4	8	42	1.56
168966--170037	491	2.2	484	80	8	1132	44	4	8	42	1.56
172567--172618	26	2.0	25	88	3	77	34	7	17	40	1.78
177625--177673	2	24.0	2	84	12	64	46	0	4	48	1.20
178104--178162	2	30.0	2	91	3	93	49	0	1	49	1.11
178178--178216	20	2.1	19	85	9	53	38	2	2	56	1.27
179150--179183	18	1.9	18	88	5	52	41	2	5	50	1.42
179959--179999	20	2.0	21	85	4	57	41	2	2	53	1.27
180703--180731	2	14.5	2	100	0	58	48	0	0	51	1.00
181402--181452	23	2.3	23	83	9	63	50	5	1	41	1.37
181931--181995	33	2.0	33	87	6	96	41	16	13	27	1.87
184192--184241	21	2.3	21	80	10	57	56	4	18	22	1.58
188146--188180	13	2.7	13	90	0	52	37	20	17	25	1.94
189950--189997	20	2.5	19	87	12	71	41	2	12	43	1.54
189959--189999	20	2.0	20	100	0	82	41	0	9	48	1.36
190756--190781	13	2.0	13	100	0	52	38	15	15	30	1.88
190738--190801	32	2.0	33	90	3	103	42	15	14	28	1.86
192042--192068	4	6.8	4	100	0	54	22	0	0	77	0.76
192252--192309	30	2.0	29	82	3	71	24	5	5	65	1.34
192786--192848	31	2.0	31	84	6	81	44	0	0	55	0.99
194010--194056	24	2.0	24	87	8	69	57	4	2	36	1.30
197409--197470	24	2.6	23	80	9	72	33	4	3	58	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197778--197825	19	2.6	19	78	15	55	50	2	0	47	1.12
197987--198071	32	2.6	32	84	5	98	52	3	0	43	1.18
198699--198777	42	1.9	42	84	2	106	49	1	1	48	1.17
198757--198800	22	2.0	22	82	8	54	54	0	0	45	0.99
200649--200681	2	16.5	2	100	0	66	51	0	48	0	1.00

Tables:   1   2

The End!