Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold336
Parameters: 2 7 7 80 10 50 1000
Length:  179563

Tables:   1   2   

This is table  2  of  2  ( 163 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
129220--129284
32
2.0
33
93
6
114
27
12
15
44
1.82
129220--129284
19
3.6
19
73
26
70
27
12
15
44
1.82
131813--131876
13
4.9
13
94
0
110
31
15
18
34
1.93
131813--131876
26
2.5
26
100
0
128
31
15
18
34
1.93
133958--133988
15
2.1
15
93
0
53
12
22
16
48
1.80
136203--136270
19
3.9
19
78
21
85
35
11
14
38
1.83
136224--136248
13
1.9
13
100
0
50
36
16
16
32
1.90
136205--136267
32
2.0
32
96
0
117
34
12
15
36
1.86
136310--136335
13
2.0
13
100
0
52
30
15
15
38
1.88
136290--136356
33
2.0
33
88
0
98
25
14
16
43
1.86
138684--138817
51
2.6
51
80
10
155
32
26
10
30
1.90
138801--138876
27
2.8
27
84
9
93
22
31
22
23
1.98
139017--139088
28
2.6
28
86
0
90
22
31
19
26
1.97
138687--139089
212
1.9
212
85
4
535
28
27
13
31
1.94
145273--148220
55
53.4
55
92
4
4813
28
29
20
21
1.98
145493--145575
27
3.0
27
60
16
62
28
30
19
21
1.98
145823--145905
27
3.0
27
60
16
62
28
30
19
21
1.98
146043--146125
27
3.0
27
60
16
62
28
30
19
21
1.98
146428--146510
27
3.0
27
60
16
62
28
30
19
21
1.98
146648--146730
27
3.0
27
60
16
62
28
30
19
21
1.98
146978--147060
27
3.0
27
60
16
62
28
30
19
21
1.98
147198--147335
27
5.0
27
60
16
68
28
29
19
21
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
149052--149151
19
5.9
19
74
25
107
35
12
15
38
1.84
149073--149129
13
3.9
13
76
24
60
35
14
15
35
1.88
149054--149148
32
3.0
32
98
0
181
34
12
15
36
1.86
149191--149216
13
2.0
13
100
0
52
30
15
15
38
1.88
149171--149237
33
2.0
33
88
0
98
25
14
16
43
1.86
151566--151907
52
6.5
53
69
17
178
28
26
12
31
1.93
151680--151755
27
2.8
28
89
2
109
23
34
21
21
1.97
151891--151959
28
2.4
30
86
9
92
23
28
20
27
1.99
151573--151959
212
1.8
212
88
4
602
27
26
13
31
1.94
155176--155201
13
2.0
13
100
0
52
30
15
15
38
1.88
155156--155219
32
2.0
33
90
3
103
28
14
15
42
1.86
156971--157023
20
2.7
20
77
11
72
32
18
13
35
1.90
162268--162302
4
8.8
4
87
0
52
25
2
0
71
1.00
169214--169276
28
2.2
28
94
5
110
19
4
20
55
1.61
169226--169285
28
2.1
28
81
6
68
28
3
20
48
1.65
169248--169316
24
2.8
24
77
4
66
23
5
26
44
1.75
169975--170024
16
3.1
16
91
0
73
40
0
16
44
1.47
170432--170473
22
2.0
21
85
4
57
23
26
7
42
1.80
174690--174730
7
5.9
7
100
0
82
26
0
0
73
0.84
174694--174740
21
2.2
21
85
7
60
34
0
0
65
0.93
176221--176266
2
23.5
2
86
4
67
47
2
2
47
1.26

Tables:   1   2

The End!