genome.fa.s342.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold342
Parameters: 2 7 7 80 10 50 1000
Length:  288538

Tables:   1   2   

This is table  2  of  2  ( 170 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
213335--213359	13	1.9	13	100	0	50	36	16	16	32	1.90
213315--213384	33	2.1	33	89	0	104	34	11	14	40	1.82
213424--213448	13	1.9	13	100	0	50	32	16	16	36	1.90
213457--213581	52	2.4	52	93	0	205	36	16	17	29	1.92
220496--220578	1	83.0	1	73	0	67	86	13	0	0	0.56
220497--220578	22	3.8	21	79	7	92	86	13	0	0	0.57
220496--220578	32	2.7	32	88	3	125	86	13	0	0	0.56
220816--220870	15	3.7	15	77	20	62	83	7	9	0	0.81
220815--220864	13	3.8	13	85	12	59	84	8	8	0	0.79
220816--220872	13	4.4	12	82	10	51	84	7	8	0	0.79
220816--220865	14	3.5	14	84	13	66	86	6	8	0	0.72
224278--224307	13	2.3	13	94	0	51	40	13	16	30	1.87
224351--224388	20	1.9	20	100	0	76	31	18	10	39	1.85
224373--224423	19	2.6	19	87	3	66	43	13	15	27	1.85
224414--224452	20	1.9	21	89	5	62	23	17	17	41	1.91
225181--225234	21	2.6	21	85	2	65	35	16	12	35	1.87
225294--225347	20	2.7	20	88	8	74	35	18	9	37	1.83
229275--229326	19	2.6	21	87	6	72	32	17	15	34	1.91
229297--229359	32	1.9	33	87	3	92	38	14	17	30	1.89
232067--232099	13	2.5	13	95	0	57	33	18	15	33	1.92
232133--232196	33	1.9	33	87	6	94	37	12	15	34	1.85
234792--234836	13	3.5	13	87	0	63	35	11	15	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234792--234842	13	3.9	13	86	0	57	37	11	15	35	1.84
234794--234854	26	2.3	26	80	0	68	39	11	13	36	1.80
238996--239020	13	1.9	13	100	0	50	32	16	16	36	1.90
239071--239129	13	5.1	13	76	23	69	38	15	16	28	1.89
240699--240738	13	3.1	13	96	0	71	40	12	15	32	1.84
240770--240862	48	1.9	48	97	0	177	34	20	13	31	1.92
242966--243126	79	2.0	79	97	0	304	42	14	8	35	1.75
245231--245256	13	2.0	13	100	0	52	38	15	15	30	1.88
250446--250471	13	2.0	13	100	0	52	38	15	15	30	1.88
251347--251399	20	2.6	21	82	8	65	37	15	16	30	1.90
251459--251484	13	2.0	13	100	0	52	38	15	15	30	1.88
258181--258225	20	2.1	22	88	8	67	17	44	28	8	1.79
267495--267541	23	2.0	23	100	0	94	25	17	19	38	1.92
267594--267719	61	2.1	61	98	0	243	34	15	11	39	1.82
270606--270643	5	7.4	5	90	3	58	78	0	18	2	0.86
270615--270652	15	2.5	15	91	0	58	71	0	26	2	1.00
271630--271655	7	3.7	7	100	0	52	38	0	0	61	0.96
273576--273627	28	1.9	26	84	7	68	25	0	7	67	1.17
274082--274106	7	3.6	7	100	0	50	16	0	12	72	1.13
275916--275957	22	1.9	22	90	0	66	23	33	2	40	1.68
275880--276066	92	2.0	92	93	0	320	31	21	6	40	1.80
277919--277943	13	1.9	13	100	0	50	40	16	16	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284047--284202	69	2.2	70	91	4	260	37	12	14	35	1.84
284186--284254	33	2.1	33	91	5	113	39	18	10	31	1.84
284211--284237	13	2.1	13	100	0	54	37	14	14	33	1.88
284283--284337	19	2.8	20	78	13	69	36	16	16	30	1.91
284323--284349	13	2.1	13	100	0	54	40	14	14	29	1.86
286843--286884	22	1.9	22	95	0	75	66	4	9	19	1.38

Tables:   1   2

The End!