Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold347
Parameters: 2 7 7 80 10 50 1000
Length:  182017

Tables:   1   2   

This is table  2  of  2  ( 163 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
138095--138149
20
2.8
20
88
5
76
29
16
16
38
1.90
139921--139962
17
2.5
17
76
7
50
42
0
4
52
1.22
144141--144189
21
2.3
20
82
10
53
55
0
0
44
0.99
145010--145133
62
2.0
62
98
0
239
32
7
17
42
1.77
147018--147054
3
12.7
3
88
5
58
67
0
2
29
1.04
147170--147201
3
10.7
3
100
0
64
68
0
0
31
0.90
152440--152496
29
2.0
29
89
0
87
31
7
1
59
1.34
152927--153015
13
6.8
13
65
19
51
58
0
4
37
1.18
152988--153065
9
9.8
9
69
22
50
47
0
0
52
1.00
153126--153206
8
8.8
10
70
22
54
56
0
0
43
0.99
153125--153208
37
2.3
38
83
16
115
57
0
0
42
0.99
153469--153510
21
2.0
21
85
0
57
73
4
7
14
1.21
153682--153715
6
5.7
6
89
0
50
14
32
0
52
1.42
154664--154688
2
12.5
2
100
0
50
48
0
0
52
1.00
159917--159953
19
1.9
19
88
0
56
45
10
2
40
1.53
160609--160648
18
2.2
18
86
8
55
47
0
0
52
1.00
163065--163138
31
2.4
31
75
11
78
62
1
2
33
1.18
163947--163984
17
2.2
18
81
13
53
52
0
0
47
1.00
164449--164488
20
2.0
20
90
9
64
65
0
0
35
0.93
165060--165101
21
2.0
22
90
4
68
80
2
0
16
0.81
165279--165305
2
13.5
2
100
0
54
51
0
0
48
1.00
165446--165486
17
2.5
16
84
4
55
43
2
0
53
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
166498--166555
21
2.8
20
77
12
55
56
0
1
41
1.09
166498--166555
22
2.7
21
75
17
57
56
0
1
41
1.09
170507--170680
92
1.9
92
95
0
312
50
15
9
25
1.74
174953--175004
21
2.5
21
84
3
70
69
7
9
13
1.37
175078--175150
36
2.1
35
82
7
85
71
6
0
21
1.09
175079--175147
27
2.9
23
74
17
68
69
7
0
23
1.13
175103--175182
39
1.9
39
85
9
106
71
6
1
21
1.15
176759--176826
29
2.3
29
85
10
84
44
1
0
54
1.09
176967--177004
18
2.2
17
86
13
51
47
0
0
52
1.00
177694--177734
16
2.5
16
81
18
57
51
0
0
48
1.00
177696--177731
17
2.1
17
90
10
56
52
0
0
47
1.00
178015--178084
36
1.9
37
86
11
101
51
20
10
18
1.74
178436--178493
28
2.0
29
83
9
75
32
0
1
65
1.03
178789--178825
2
18.5
2
100
0
74
0
48
0
51
1.00
179899--179940
18
2.3
19
80
12
52
61
0
0
38
0.96
180713--180753
20
2.2
19
91
8
66
43
0
4
51
1.23
180934--180999
20
3.2
21
75
12
66
48
3
0
48
1.17
180970--181034
19
3.4
18
81
8
67
40
3
0
56
1.15
180990--181043
18
2.9
17
83
8
54
35
3
0
61
1.14
181496--181554
16
3.7
16
80
8
59
45
1
1
50
1.21
181977--182014
19
2.2
18
86
13
53
23
2
7
65
1.32

Tables:   1   2

The End!