genome.fa.s348.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold348
Parameters: 2 7 7 80 10 50 1000
Length:  425534

Tables:   1   2   3   

This is table  3  of  3  ( 355 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317140--317164	6	4.2	6	100	0	50	16	0	68	16	1.22
317817--317869	25	2.1	25	86	6	72	20	3	7	67	1.31
318648--318690	17	2.6	17	82	10	54	65	2	0	32	1.06
320647--320707	30	2.0	29	87	12	88	47	1	0	50	1.10
320674--320737	17	3.5	18	77	14	69	42	0	0	57	0.98
322948--323011	25	2.5	26	75	14	69	45	1	1	51	1.20
322949--323011	26	2.4	27	73	7	67	46	1	1	50	1.20
324462--324496	2	17.5	2	100	0	70	0	48	0	51	1.00
329742--329766	4	6.2	4	100	0	50	24	0	0	76	0.80
330954--330987	2	17.0	2	100	0	68	50	0	0	50	1.00
338506--338546	18	2.3	18	86	0	55	51	2	2	43	1.28
339031--339070	2	20.0	2	100	0	80	50	0	0	50	1.00
339954--340002	20	2.4	21	73	13	57	24	2	6	67	1.24
340432--340471	19	2.2	19	90	4	64	45	0	0	55	0.99
340426--340470	18	2.4	19	85	11	65	44	0	2	53	1.13
340467--340508	21	2.0	20	82	13	50	57	0	0	42	0.99
342200--342283	21	4.0	20	70	18	62	45	0	2	52	1.13
342503--342560	17	3.6	17	76	23	63	60	0	1	37	1.07
344295--344333	16	2.4	17	83	16	55	66	0	2	30	1.05
344264--344327	27	2.4	27	81	5	67	59	0	6	34	1.23
344282--344333	16	3.2	16	76	15	54	67	0	1	30	1.02
347276--347319	16	2.8	16	83	10	56	43	2	0	54	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350338--350369	3	10.7	3	100	0	64	68	0	0	31	0.90
350442--350500	30	1.9	31	86	3	84	28	0	1	69	0.98
351620--351789	10	13.8	12	65	24	54	60	0	1	37	1.12
351619--351678	17	3.7	16	80	8	68	66	0	3	30	1.07
351687--351728	20	2.0	21	86	13	61	59	0	0	40	0.97
351681--351728	17	2.8	17	75	12	62	60	0	0	39	0.97
356380--356437	16	3.3	19	71	28	65	53	0	0	46	1.00
356388--356437	17	3.1	17	72	21	61	52	0	0	48	1.00
356377--356475	41	2.4	39	74	14	101	54	1	0	44	1.06
357072--357137	30	2.3	29	76	5	71	40	0	0	59	0.98
357089--357133	15	3.0	15	78	21	58	42	0	0	57	0.98
357124--357167	18	2.4	19	81	11	56	34	0	0	65	0.93
358544--358579	2	18.0	2	100	0	72	50	0	0	50	1.00
359404--359429	2	13.0	2	100	0	52	50	0	0	50	1.00
362532--362561	15	1.9	16	93	6	53	26	0	0	73	0.84
363505--363837	70	4.7	72	79	6	327	29	1	14	54	1.50
363505--364278	143	5.2	142	75	13	460	31	2	12	54	1.49
363821--363868	18	2.6	19	83	9	64	25	4	8	62	1.41
363858--363924	32	2.1	32	97	0	125	25	2	5	65	1.29
363875--363951	32	2.4	32	84	6	93	32	2	7	57	1.41
363890--364276	73	5.4	73	80	5	441	34	2	10	52	1.48
363584--364140	309	1.8	307	83	4	755	29	2	11	56	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363886--364276	144	2.7	141	85	5	518	34	2	10	53	1.47
368117--368211	39	2.4	39	77	3	102	42	7	2	48	1.43
369684--369748	18	3.4	18	73	22	69	30	0	7	61	1.24
369671--369754	40	2.1	40	97	0	159	32	0	7	60	1.24
369701--369734	15	2.3	15	89	0	50	29	0	2	67	1.05
371779--371815	19	2.0	19	89	5	58	37	0	0	62	0.96
371783--371850	28	2.4	28	71	11	68	38	0	1	60	1.06
371938--371968	16	1.9	16	93	0	53	58	0	0	41	0.98
371933--372017	43	2.0	42	82	11	102	49	1	1	48	1.16
372425--372502	37	2.2	34	84	13	97	65	0	0	34	0.93
372966--373006	12	3.1	14	75	13	50	68	2	0	29	1.03
372973--373040	23	3.0	21	73	12	55	66	1	0	32	1.01
372986--373041	18	3.1	18	73	19	53	67	0	0	32	0.91
372980--373072	16	5.4	16	73	15	62	64	3	0	32	1.09
373086--373152	4	16.8	4	81	6	82	0	20	0	79	0.74
373086--373155	27	2.7	25	79	18	88	0	21	0	78	0.75
373236--373290	21	2.8	20	81	10	60	45	0	1	52	1.11
373260--373301	17	2.3	18	80	8	50	54	2	0	42	1.13
373271--373344	25	2.7	27	76	15	80	50	1	1	47	1.18
374077--374189	58	1.9	58	80	5	129	32	9	5	52	1.57
374305--374339	18	1.9	18	88	11	54	20	8	8	62	1.49
376605--376633	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377497--377533	19	1.9	19	89	10	58	32	0	0	67	0.91
378344--378397	26	2.0	28	82	7	67	38	0	0	61	0.96
378385--378445	28	2.2	28	88	5	88	65	1	1	31	1.12
378926--378969	20	2.2	20	95	0	79	38	18	20	22	1.93
379066--379103	20	1.9	20	94	0	67	47	5	5	42	1.48
379150--379196	24	2.0	24	83	8	60	48	2	2	46	1.25
380637--380676	20	2.0	20	85	9	55	40	2	15	42	1.60
381211--381241	15	2.1	15	94	5	55	61	0	0	38	0.96
381689--381720	7	4.6	7	96	0	55	87	0	3	9	0.64
382350--382409	30	2.0	30	83	6	77	50	1	6	41	1.39
385811--385836	12	2.2	12	100	0	52	23	26	0	50	1.50
387706--387740	15	2.5	14	90	9	54	65	8	0	25	1.21
388310--388335	1	26.0	1	100	0	52	0	0	0	100	0.00
390157--390258	50	2.0	50	92	0	168	35	17	13	33	1.89
390773--390812	2	20.0	2	100	0	80	50	0	0	50	1.00
394683--394708	2	13.0	2	100	0	52	50	0	0	50	1.00
395264--395290	12	2.2	12	100	0	54	7	7	0	85	0.75
395257--395285	15	1.9	15	100	0	58	6	6	0	86	0.72
395554--395611	14	4.3	14	75	18	52	51	0	0	48	1.00
395581--395627	19	2.5	19	82	0	58	48	2	0	48	1.13
396163--396199	2	19.0	2	94	5	67	48	0	0	51	1.00
396496--396546	20	2.5	20	90	6	77	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398133--398198	17	4.0	16	75	11	62	51	1	0	46	1.10
398133--398197	33	2.0	33	81	6	78	50	1	0	47	1.10
398133--398207	15	4.8	16	76	12	66	53	1	0	45	1.08
398166--398233	15	4.7	14	74	16	50	58	2	1	36	1.22
398454--398505	15	3.6	14	80	16	54	80	0	19	0	0.71
399135--399166	12	2.7	12	95	0	55	87	0	12	0	0.54
399407--399451	22	2.0	23	87	8	67	26	0	2	71	0.98
401139--401163	11	2.3	11	100	0	50	24	0	0	76	0.80
401192--401233	17	2.5	17	80	3	50	26	9	2	61	1.39
401255--401312	28	2.0	28	83	9	73	56	5	0	37	1.21
401430--401482	16	3.3	15	75	12	52	50	1	0	47	1.12
407964--408024	25	2.5	24	74	12	61	55	3	0	40	1.16
409722--409759	3	12.7	3	100	0	76	65	0	0	34	0.93
410569--410598	15	2.0	15	93	0	51	0	36	6	56	1.26
411305--411338	17	2.0	17	88	0	50	64	0	0	35	0.94
411325--411372	15	3.0	16	85	8	62	45	0	0	54	0.99
411316--411368	23	2.2	24	83	12	74	50	0	0	49	1.00
411332--411373	17	2.5	17	84	0	57	42	0	0	57	0.99
412373--412418	2	23.0	2	95	0	83	50	2	0	47	1.13
413353--413441	45	2.1	43	81	12	103	40	1	0	58	1.05
413395--413472	34	2.3	34	82	8	88	39	1	0	58	1.06
419850--419888	20	2.0	19	85	5	51	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421313--421354	22	1.9	22	90	9	68	38	0	0	61	0.96
421515--421564	20	2.4	21	83	9	68	58	4	4	34	1.36
421515--421575	21	3.1	19	70	11	50	60	3	3	32	1.29
422742--422820	32	2.5	32	82	12	92	50	1	1	46	1.17
425029--425068	19	2.0	20	85	9	55	47	0	2	50	1.14

Tables:   1   2   3

The End!