genome.fa.s352.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold352
Parameters: 2 7 7 80 10 50 1000
Length:  630196

Tables:   1   2   3   4   

This is table  4  of  4  ( 417 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
532639--532705	33	2.0	33	88	0	98	34	11	13	40	1.81
532659--532683	13	1.9	13	100	0	50	36	16	16	32	1.90
532747--532771	13	1.9	13	100	0	50	32	16	16	36	1.90
532780--532900	52	2.3	52	97	0	224	34	18	18	28	1.94
547839--547863	12	2.1	12	100	0	50	44	16	16	24	1.86
552965--553005	20	2.0	20	100	0	82	46	4	24	24	1.72
554455--554503	24	2.1	24	92	3	82	38	18	22	20	1.93
555722--555755	11	3.1	11	86	0	50	85	0	14	0	0.60
556208--556325	55	2.1	54	81	9	132	41	2	2	53	1.28
556226--556331	55	1.9	54	86	7	149	39	2	2	54	1.30
556830--556878	22	2.2	22	92	0	80	14	8	26	51	1.70
556862--556994	34	3.9	34	81	3	160	25	7	25	41	1.81
556852--557001	68	2.2	68	91	0	237	24	6	26	42	1.79
557300--557361	19	3.3	18	84	6	79	29	20	17	32	1.96
557329--557370	18	2.3	19	83	4	50	28	19	23	28	1.98
561422--561549	34	3.8	34	86	1	186	22	4	28	44	1.73
561422--561549	68	1.9	67	93	1	220	22	4	28	44	1.73
563935--563970	17	2.1	17	94	0	63	52	8	0	38	1.32
563941--563977	17	2.2	17	90	4	58	54	8	0	37	1.30
566914--567006	48	2.0	48	86	2	134	38	5	16	39	1.71
569092--569124	5	6.8	5	86	6	50	81	3	0	15	0.80
571381--571410	4	7.5	4	100	0	60	0	23	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
575510--575558	2	24.5	2	100	0	98	48	0	0	51	1.00
580110--580157	24	2.0	24	88	8	71	31	16	8	43	1.78
580549--580671	61	2.0	61	96	0	228	27	14	24	33	1.94
582203--582280	16	4.5	17	75	20	65	25	16	14	43	1.85
582235--582279	19	2.5	17	82	13	54	20	20	15	44	1.87
582238--582277	18	2.1	20	86	9	57	17	17	15	50	1.79
582836--582931	42	2.3	42	81	5	104	43	35	7	13	1.72
582827--582905	21	3.8	21	77	3	88	41	35	8	13	1.76
585631--586018	206	1.9	205	83	4	505	30	12	16	40	1.85
587860--587887	2	14.0	2	100	0	56	50	0	0	50	1.00
589982--590008	2	13.5	2	100	0	54	51	0	0	48	1.00
594062--594192	58	2.3	58	80	5	140	28	13	11	46	1.78
594446--594597	59	2.6	57	78	4	160	25	8	17	48	1.76
597875--597926	20	2.5	22	78	18	65	34	3	0	61	1.14
597886--597920	18	2.1	17	89	10	54	28	0	0	71	0.86
599140--599164	5	5.0	5	100	0	50	40	0	0	60	0.97
600029--600076	3	16.0	3	100	0	96	66	0	0	33	0.92
600774--600830	21	2.6	21	78	15	71	38	3	0	57	1.16
600951--601030	17	4.8	17	64	18	51	56	0	2	41	1.13
601054--601090	19	2.0	18	89	5	56	32	0	0	67	0.91
605159--605218	9	6.8	9	78	3	59	18	1	3	76	1.00
605159--605212	26	2.1	26	85	0	72	16	1	1	79	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
606190--606248	16	3.8	15	74	14	57	32	5	6	55	1.48
609894--609931	19	2.1	19	90	5	60	63	7	13	15	1.51
610895--610936	2	21.0	2	100	0	84	50	0	50	0	1.00
611014--611039	1	26.0	1	100	0	52	0	0	0	100	0.00
617292--617331	21	2.0	21	85	9	57	45	2	0	52	1.14
617292--617344	19	2.7	19	78	13	54	43	1	0	54	1.11
617345--617378	17	1.9	18	88	5	52	61	0	0	38	0.96
617344--617391	25	1.9	24	83	8	60	60	0	0	39	0.97
620912--620969	29	2.0	29	86	0	80	46	1	3	48	1.29
623281--623526	134	1.8	134	81	6	302	24	22	15	36	1.93
624493--624518	2	13.0	2	100	0	52	50	0	0	50	1.00
624852--624877	3	8.7	3	100	0	52	30	0	0	69	0.89
626468--626499	15	2.2	15	94	5	57	18	3	31	46	1.65

Tables:   1   2   3   4

The End!