genome.fa.s355.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold355
Parameters: 2 7 7 80 10 50 1000
Length:  530098

Tables:   1   2   3   4   

This is table  4  of  4  ( 438 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
461287--461334	22	2.2	23	88	7	73	52	0	0	47	1.00
462995--463034	2	20.0	2	100	0	80	50	0	0	50	1.00
463337--463365	2	14.5	2	100	0	58	48	0	0	51	1.00
469527--469576	25	2.0	26	84	11	68	52	8	2	38	1.43
470242--470293	14	3.6	15	82	12	56	59	0	0	40	0.97
470253--470440	6	28.1	7	66	29	67	59	2	0	38	1.14
470262--470441	5	36.4	5	66	20	85	59	2	0	37	1.14
470245--470309	23	3.0	22	80	13	64	63	0	0	36	0.95
470245--470443	27	7.2	28	69	17	123	59	2	0	38	1.13
470378--470446	11	6.1	11	70	11	50	59	0	0	40	0.97
470262--470454	43	4.5	43	67	22	111	58	2	0	38	1.14
470348--470459	27	4.1	27	70	19	88	57	1	0	40	1.15
470859--470931	31	2.3	31	79	6	76	50	0	0	49	1.00
473449--473486	16	2.3	16	86	13	51	73	2	0	23	0.95
473804--473940	68	2.0	68	98	0	265	27	18	20	33	1.96
473985--474025	12	3.3	13	83	10	50	41	0	2	56	1.13
475819--475860	22	2.0	21	86	13	59	40	0	0	59	0.97
476111--476148	16	2.4	16	86	8	51	36	0	2	60	1.11
479759--479786	13	2.2	13	100	0	56	39	17	14	28	1.89
479741--479806	33	2.0	33	88	5	98	40	13	15	30	1.85
480185--480231	21	2.2	21	85	7	60	42	0	0	57	0.98
480485--480516	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480768--480799	15	2.1	15	94	0	55	56	0	0	43	0.99
480775--480827	20	2.8	19	83	13	65	49	0	0	50	1.00
480764--480828	20	3.1	22	74	14	57	53	0	0	46	1.00
481188--481261	20	3.5	20	80	12	85	32	2	0	64	1.07
481213--481256	12	3.6	12	82	11	54	27	2	0	70	0.99
481208--481264	25	2.4	25	82	11	75	29	3	0	66	1.08
481193--481254	32	1.9	32	84	12	83	30	1	0	67	1.00
481644--481731	2	44.0	2	95	0	131	50	5	0	44	1.26
482127--482165	15	2.5	16	83	8	53	56	5	5	33	1.43
484925--484957	15	2.3	14	94	5	57	0	15	0	84	0.61
485054--485094	3	13.7	3	100	0	82	31	0	0	68	0.90
486411--486455	21	2.2	21	88	4	65	11	51	11	26	1.71
486891--486929	18	2.2	17	86	4	51	43	0	10	46	1.37
486948--486987	20	2.0	21	90	5	64	60	2	0	37	1.11
487175--487221	3	16.0	3	95	4	87	68	0	0	31	0.90
487232--487278	15	3.2	14	85	8	67	44	0	0	55	0.99
487482--487520	15	2.6	14	80	11	51	61	0	2	35	1.10
489252--489502	72	3.5	71	74	10	231	53	10	2	33	1.49
489670--489718	14	3.3	15	77	8	55	46	0	0	53	1.00
489674--489722	15	3.5	14	83	8	64	53	0	0	46	1.00
489665--489722	28	2.0	28	86	6	80	51	0	0	48	1.00
492753--492796	2	22.0	2	100	0	88	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
493245--493303	26	2.4	25	80	11	68	44	0	6	49	1.29
493216--493747	197	2.7	197	82	6	589	44	4	7	43	1.52
493647--493687	21	1.9	21	85	5	55	51	2	2	43	1.28
494125--494173	17	2.9	17	84	6	64	69	2	0	28	1.00
494120--494172	27	1.9	27	85	11	72	66	1	0	32	1.03
494130--494179	17	3.0	16	78	18	57	68	2	0	30	1.01
494581--494610	1	30.0	1	100	0	60	100	0	0	0	0.00
494733--494784	2	26.5	2	88	3	79	48	3	0	48	1.20
496961--497242	142	2.0	142	96	1	521	41	14	17	25	1.88
503334--503397	27	2.4	25	82	15	67	40	0	3	56	1.15
505470--505508	20	2.0	20	85	10	53	43	2	10	43	1.52
509353--509377	13	1.9	13	100	0	50	36	16	16	32	1.90
509440--509464	13	1.9	13	100	0	50	32	16	16	36	1.90
509473--509653	52	3.5	52	97	0	335	34	18	17	28	1.94
523515--523613	1	99.0	1	77	0	72	85	8	4	2	0.78
523515--523613	17	6.1	16	75	9	94	85	8	4	2	0.78
523514--523613	27	3.7	26	77	15	85	85	9	4	2	0.81
523514--523615	44	2.3	45	85	9	140	83	8	5	1	0.88
523514--523596	33	2.5	34	82	5	107	85	7	4	2	0.81
525051--525174	27	4.4	27	79	7	122	30	29	17	22	1.97
525077--525202	27	4.4	27	78	10	99	29	32	18	19	1.96
525077--525202	55	2.2	59	83	7	152	29	32	18	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
525114--525202	30	3.0	30	75	19	96	30	34	16	17	1.93
525195--525465	43	5.8	46	85	9	297	26	25	17	30	1.97
525310--525377	21	3.2	21	66	25	61	26	27	17	27	1.98
525375--525527	53	2.9	53	81	4	182	24	23	16	35	1.95
525376--525695	165	1.9	170	87	7	474	24	24	15	36	1.94
525549--525899	49	7.3	49	82	9	400	24	24	16	33	1.96
525548--525897	147	2.4	142	85	7	442	24	24	16	34	1.96
525793--525883	43	2.1	43	93	0	164	24	25	19	30	1.98
525726--525931	92	2.2	92	75	10	233	22	26	17	33	1.96
526638--526662	13	1.9	13	100	0	50	36	16	16	32	1.90
526725--526749	13	1.9	13	100	0	50	32	16	16	36	1.90
526758--526937	52	3.5	52	98	0	344	35	18	17	28	1.94

Tables:   1   2   3   4

The End!