Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold356
Parameters: 2 7 7 80 10 50 1000
Length:  432500

Tables:   1   2   3   4   

This is table  4  of  4  ( 415 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
357321--357426
16
7.1
15
68
19
62
58
0
0
41
0.98
358272--358303
16
2.0
16
93
0
55
37
9
0
53
1.34
361650--361687
15
2.5
15
83
8
51
15
0
10
73
1.09
362662--362757
48
2.0
48
100
0
192
27
10
8
54
1.63
368663--368723
16
3.8
16
72
12
54
52
0
0
47
1.00
368738--368795
13
4.6
12
80
6
53
43
1
0
55
1.10
369204--369242
17
2.2
18
86
4
53
69
2
0
28
1.02
369194--369266
18
4.4
17
73
18
64
57
2
0
39
1.13
369194--369273
16
4.9
16
73
17
67
60
2
0
37
1.11
369825--369881
24
2.3
26
79
14
66
42
1
1
54
1.21
372549--372586
16
2.4
16
86
0
58
42
2
10
44
1.52
372608--372661
26
2.1
26
82
6
65
51
1
0
46
1.11
377627--377729
23
4.2
25
68
20
65
43
0
0
56
0.99
377630--377695
28
2.4
27
85
10
80
45
0
0
54
0.99
377658--377693
17
2.0
19
89
10
58
38
0
0
61
0.96
377647--377700
17
3.2
17
73
21
51
40
0
0
59
0.98
378745--378776
16
2.0
16
93
0
55
34
0
0
65
0.93
382607--382686
31
2.6
31
82
9
92
47
2
0
50
1.14
382694--382749
20
2.8
19
84
10
60
46
1
1
50
1.22
384384--384438
21
2.5
22
77
11
60
20
10
0
69
1.18
385473--385520
16
3.0
17
80
14
50
41
2
0
56
1.11
386904--386938
16
2.2
16
90
5
54
34
8
5
51
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
390319--390347
14
2.1
14
100
0
58
27
13
6
51
1.66
392220--392256
20
1.9
20
88
5
58
43
0
0
56
0.99
392442--392474
2
16.5
2
100
0
66
51
0
0
48
1.00
394380--394625
120
2.0
120
85
1
323
29
26
21
23
1.99
402076--402161
41
2.1
41
81
12
97
47
0
0
52
1.00
402536--402603
21
3.1
21
85
12
77
45
1
2
50
1.26
402587--402618
16
2.0
16
93
0
55
46
0
0
53
1.00
403149--403173
10
2.5
10
100
0
50
24
0
0
76
0.80
404492--404521
15
2.1
15
93
6
53
23
0
0
76
0.78
404782--404834
19
2.8
18
78
18
54
54
0
0
45
0.99
407490--407543
21
2.7
19
75
11
54
57
0
5
37
1.22
408330--408357
14
2.0
14
100
0
56
64
0
0
35
0.94
408950--409027
13
6.3
11
75
19
57
32
1
0
66
1.00
408956--409025
22
3.1
22
81
10
70
31
1
0
67
1.00
414497--414548
19
2.6
20
72
6
52
73
0
7
19
1.07
414575--414642
24
2.8
24
84
6
75
63
1
1
33
1.13
414769--414874
8
12.0
9
70
16
53
39
0
1
57
1.16
414830--414892
18
3.8
17
71
25
62
44
1
0
53
1.10
414843--414890
16
3.1
15
77
16
53
45
2
0
52
1.12
418616--418659
21
2.2
20
84
12
54
40
0
0
59
0.98
419121--419150
15
2.0
15
100
0
60
40
0
13
46
1.43
419119--419152
17
2.0
17
94
0
59
38
0
14
47
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
420254--420300
24
2.0
23
88
12
69
46
2
0
51
1.13
420254--420306
22
2.4
21
80
17
63
47
1
0
50
1.12
420614--420665
25
2.1
25
85
7
70
67
1
0
30
1.02
420625--420663
9
4.0
9
87
12
51
71
0
0
28
0.86
420948--421010
26
2.4
26
82
12
67
60
0
1
38
1.07
421818--421860
21
2.1
20
82
4
50
48
2
0
48
1.14
422947--423003
20
2.7
21
89
5
80
26
14
14
45
1.82
424428--424969
282
1.9
280
94
1
951
31
17
14
35
1.90
427369--427400
2
16.0
2
93
0
55
46
0
0
53
1.00
428177--428219
2
21.5
2
95
0
77
51
2
0
46
1.13
428366--428482
55
2.1
57
90
7
186
43
6
5
43
1.55

Tables:   1   2   3   4

The End!