genome.fa.s363.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold363
Parameters: 2 7 7 80 10 50 1000
Length:  552799

Tables:   1   2   3   4   

This is table  2  of  4  ( 366 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
211193--211243	17	3.0	17	80	11	52	52	0	1	45	1.12
211752--211794	4	10.5	4	80	5	50	2	25	2	69	1.12
214976--215018	17	2.6	18	78	14	56	41	0	0	58	0.98
216818--216896	21	3.8	21	73	9	72	40	5	40	13	1.67
216971--217019	3	16.3	3	86	0	71	32	4	36	26	1.75
217031--217069	9	4.3	9	86	0	51	46	0	53	0	1.00
226214--226334	17	6.8	17	69	17	68	35	1	0	62	1.05
226196--226332	72	1.9	72	82	5	170	35	1	0	62	1.04
228269--228310	7	6.0	7	79	20	52	69	0	2	28	1.01
228327--228353	13	2.1	13	100	0	54	29	0	0	70	0.88
228536--228568	14	2.2	16	89	10	52	42	0	0	57	0.98
228934--228967	15	2.3	15	89	0	50	55	0	2	41	1.15
229026--229060	17	2.0	18	88	5	54	60	0	0	40	0.97
229026--229060	18	2.0	18	88	5	54	60	0	0	40	0.97
235951--235990	21	1.9	21	84	0	53	40	2	12	45	1.56
236292--236350	21	2.9	21	85	5	68	54	0	1	44	1.10
236955--236987	2	16.5	2	100	0	66	51	0	0	48	1.00
236987--237025	2	19.5	2	100	0	78	51	0	48	0	1.00
242684--242709	12	2.2	12	100	0	52	57	0	7	34	1.27
244509--244543	3	11.7	3	87	0	52	68	5	0	25	1.11
244509--244543	12	2.9	12	95	0	61	68	5	0	25	1.11
246790--246830	19	2.2	19	86	4	57	60	0	2	36	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
252567--252665	21	4.9	21	70	9	62	44	1	0	54	1.06
252643--252753	8	14.0	8	72	22	51	38	0	0	60	1.03
252632--252735	24	4.5	24	73	23	80	38	0	0	60	1.03
252634--252695	25	2.4	26	82	15	76	38	0	0	61	0.96
252638--252735	34	2.9	35	83	13	123	37	1	0	61	1.03
252635--252756	13	10.2	12	73	24	82	38	0	0	60	1.02
252634--252753	58	2.1	55	81	15	131	37	0	0	61	1.02
252687--252764	20	4.2	19	71	21	58	38	1	0	60	1.05
252687--252765	27	3.0	26	71	15	72	39	1	0	59	1.06
255482--255523	16	2.6	16	81	11	59	30	0	2	66	1.04
256375--256413	2	20.0	2	94	5	71	48	0	0	51	1.00
265125--265172	20	2.4	19	80	16	53	45	0	2	52	1.12
266004--266062	2	29.0	2	84	3	73	47	3	1	47	1.29
265975--266041	29	2.5	25	76	17	71	46	11	0	41	1.41
265983--266047	29	2.2	30	88	8	105	49	9	0	41	1.35
265991--266049	29	2.0	29	100	0	118	49	6	0	44	1.29
266501--266538	3	13.0	3	88	5	60	28	0	2	68	1.03
271112--271189	27	2.9	27	86	0	93	62	3	12	20	1.45
271116--271207	27	3.4	27	83	1	87	56	3	16	23	1.55
272077--272103	2	13.5	2	100	0	54	51	48	0	0	1.00
272020--272100	41	2.0	41	82	4	101	48	30	2	18	1.61
273065--273096	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273486--273544	23	2.6	22	76	15	59	50	0	3	45	1.18
277092--277116	2	12.5	2	100	0	50	48	0	0	52	1.00
277832--277856	2	12.5	2	100	0	50	52	0	0	48	1.00
280839--280887	17	2.9	17	76	11	55	65	0	0	34	0.93
281251--281305	17	2.9	18	76	13	58	54	0	0	45	0.99
284308--284343	2	18.0	2	94	0	63	47	2	0	50	1.15
287563--287606	15	2.8	16	79	10	54	52	0	0	47	1.00
287563--287606	17	2.8	15	77	12	52	52	0	0	47	1.00
289043--289098	27	2.0	28	83	10	71	42	1	5	50	1.35
289170--289222	16	3.4	16	74	7	56	47	3	9	39	1.54
291135--291159	2	12.5	2	100	0	50	48	0	0	52	1.00
293639--293683	2	22.5	2	100	0	90	51	0	48	0	1.00
295436--295501	34	1.9	34	85	11	91	50	0	3	46	1.16
296212--296258	22	2.1	23	92	4	78	57	0	0	42	0.98
298176--298262	20	4.2	20	72	13	70	56	0	1	42	1.07
298180--298258	26	3.0	26	81	7	79	53	0	1	45	1.08
298879--298913	18	1.9	18	88	0	52	40	2	2	54	1.30
300355--300396	2	21.0	2	95	0	75	47	0	2	50	1.14
307781--307810	2	15.0	2	100	0	60	50	0	50	0	1.00
310105--310135	16	1.9	16	93	0	53	25	32	6	35	1.82
319307--319428	10	12.4	10	72	16	60	47	0	1	50	1.16
319756--319843	19	4.8	18	75	15	74	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
319764--319842	10	8.1	10	70	21	53	58	0	0	41	0.98
322215--322363	74	2.0	74	89	1	228	36	2	12	48	1.55
324749--324779	2	15.5	2	100	0	62	0	48	0	51	1.00
335024--335096	10	7.3	10	72	21	55	30	1	1	67	1.08
335302--335332	1	31.0	1	100	0	62	100	0	0	0	0.00
337693--337736	23	1.9	23	100	0	88	27	20	22	29	1.99
353715--353792	36	2.3	34	86	10	106	52	1	0	46	1.08
357509--357544	14	2.6	14	95	0	63	52	0	0	47	1.00
357545--357592	20	2.3	21	82	3	62	54	0	2	43	1.12
358206--358258	28	1.9	27	84	3	70	35	1	0	62	1.06
360729--360790	23	2.8	22	77	18	65	46	0	0	53	1.00
360764--360808	22	1.9	25	86	13	69	44	0	0	55	0.99
362240--362307	17	4.2	16	75	22	63	48	1	1	48	1.19
362331--362373	14	3.0	14	86	10	52	60	2	0	37	1.10
362335--362373	15	2.6	14	88	8	51	58	2	0	38	1.12
366851--366957	25	4.0	28	72	11	82	51	0	0	48	1.00
366851--366916	13	4.7	15	75	21	63	50	0	0	50	1.00
366851--366932	40	2.0	39	84	11	103	50	0	0	50	1.00
366925--366971	15	3.0	15	77	17	51	55	2	0	42	1.12
368037--368083	22	2.1	22	88	0	67	19	2	23	55	1.54
368150--368217	34	2.0	34	88	0	100	27	4	20	47	1.69
368564--368599	18	2.0	18	88	0	54	27	11	25	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371639--371668	2	15.0	2	100	0	60	0	50	0	50	1.00
371668--371697	2	15.0	2	100	0	60	50	50	0	0	1.00
378657--378731	28	2.8	26	83	4	96	21	5	21	52	1.67
380263--380300	6	6.3	6	82	11	51	78	2	15	2	0.97
382945--383004	27	2.3	26	82	5	68	46	11	26	15	1.79
388847--388907	19	3.2	19	73	15	54	57	3	0	39	1.15
389209--389279	20	3.5	20	76	3	63	53	0	0	46	1.00
397236--397288	9	5.8	9	82	8	54	32	0	0	67	0.91
397237--397350	22	4.8	23	66	21	65	39	0	0	60	0.97
397248--397304	18	3.1	18	78	12	62	33	0	0	66	0.92
397237--397299	31	2.0	31	85	11	85	33	0	0	66	0.92
397774--397825	26	2.0	25	88	3	77	42	0	7	50	1.31
397774--397825	25	2.1	25	85	7	70	42	0	7	50	1.31
398686--398747	27	2.3	27	83	5	72	37	1	1	59	1.17
399474--399558	38	2.2	38	81	8	91	34	11	14	40	1.82
402149--402207	27	2.2	27	90	0	91	23	15	38	22	1.92
402243--402304	30	2.1	30	84	0	79	38	12	6	41	1.69
404150--404183	16	2.1	16	100	0	68	52	5	23	17	1.66
410359--410408	17	2.9	18	72	21	54	52	0	0	48	1.00
410399--410453	22	2.5	23	88	11	80	40	0	3	56	1.17
410525--410594	23	2.9	24	69	14	63	37	2	5	54	1.39
410711--410745	17	2.1	17	88	0	52	34	0	2	62	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
410976--411016	15	2.5	17	80	11	50	51	0	2	46	1.14
411266--411439	93	1.9	93	89	4	271	55	3	2	39	1.30
411474--411555	24	3.2	24	72	24	69	52	2	1	43	1.22
412272--412312	21	1.9	22	90	5	66	14	0	2	82	0.76
412270--412312	23	1.9	22	86	13	61	13	0	2	83	0.74
415215--415246	6	4.9	7	92	7	50	21	0	0	78	0.76
415211--415251	11	4.0	11	81	18	52	21	0	0	78	0.76
415214--415248	15	2.2	17	90	10	56	20	0	0	80	0.72
415036--415222	91	2.1	91	89	1	286	40	6	9	44	1.62
415409--415466	17	3.2	18	87	7	82	17	0	3	79	0.87

Tables:   1   2   3   4