genome.fa.s366.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold366
Parameters: 2 7 7 80 10 50 1000
Length:  222455

Tables:   1   2   

This is table  2  of  2  ( 144 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187549--187574	12	2.2	12	100	0	52	50	7	0	42	1.31
189361--189412	13	4.0	13	94	0	86	38	15	17	28	1.90
191475--191505	15	2.1	15	93	0	53	12	22	16	48	1.80
193309--193353	21	2.1	21	84	8	56	22	20	4	53	1.63
195578--195603	13	2.0	13	100	0	52	30	15	15	38	1.88
195986--198242	476	4.7	474	86	3	2970	35	14	19	30	1.92
196940--199359	160	15.3	158	65	13	631	35	15	19	30	1.92
195985--198212	953	2.3	949	86	2	3066	35	14	19	30	1.92
197888--198555	318	2.1	312	83	5	833	34	16	18	30	1.92
197412--199013	791	2.0	790	85	3	2150	34	15	19	30	1.92
198206--201086	478	6.0	476	85	4	3604	35	14	19	30	1.92
197412--199333	791	2.4	785	79	7	1726	34	15	19	30	1.92
201105--202508	478	2.9	475	88	1	2033	36	13	18	31	1.90
205118--205145	12	2.3	12	100	0	56	42	21	0	35	1.53
209664--209703	18	2.3	18	87	8	57	35	7	20	37	1.81
215013--215065	20	2.7	20	81	0	61	30	22	13	33	1.92
215095--215184	20	4.7	20	74	18	75	40	11	16	32	1.84
215094--215147	19	2.8	20	77	5	65	40	11	16	31	1.84
218767--218843	12	5.9	12	72	26	59	41	0	44	14	1.45
218758--218876	42	2.8	42	89	0	166	44	0	42	11	1.46
218767--218852	24	3.8	24	73	17	85	43	0	41	15	1.46
218788--218848	9	7.1	9	70	10	56	42	0	42	14	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
218812--218857	12	3.9	12	81	13	51	43	0	43	13	1.43
218833--218882	18	2.8	18	81	6	57	46	2	44	8	1.44

Tables:   1   2

The End!