genome.fa.s377.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold377
Parameters: 2 7 7 80 10 50 1000
Length:  247558

Tables:   1   2   

This is table  2  of  2  ( 187 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168670--168694	13	1.9	13	100	0	50	28	16	16	40	1.89
168681--168736	20	2.8	20	89	2	78	28	16	19	35	1.93
168765--168819	20	2.7	21	86	11	78	34	14	18	32	1.91
168954--169025	20	3.7	20	83	10	78	30	16	15	37	1.90
168973--169027	19	2.8	20	86	10	78	32	16	16	34	1.91
169076--169124	13	4.2	13	75	24	63	32	14	16	36	1.89
169055--169124	33	2.1	34	87	12	101	34	14	17	34	1.90
177730--177756	13	2.1	13	100	0	54	29	14	14	40	1.86
177740--177796	19	2.9	19	89	2	87	31	17	17	33	1.93
177825--177893	33	2.1	34	86	8	97	36	11	15	36	1.84
181461--181501	21	2.0	21	95	0	73	9	36	4	48	1.58
183277--183396	51	2.4	51	85	0	150	30	16	26	26	1.97
185741--185770	13	2.3	13	94	0	51	40	16	13	30	1.87
185692--185817	62	2.0	63	92	4	211	42	17	15	25	1.88
186386--186704	62	5.2	62	91	3	495	29	19	26	23	1.98
186386--186704	123	2.6	124	92	4	513	29	19	26	23	1.98
187649--187700	12	4.2	12	80	9	52	1	7	5	84	0.84
187652--187700	14	3.6	14	86	2	64	2	6	6	85	0.80
202576--202605	13	2.3	13	94	0	51	43	13	13	30	1.82
202527--202655	62	2.1	63	86	1	179	42	16	14	26	1.86
204856--205026	78	2.2	78	75	6	175	28	12	17	42	1.85
207303--207343	21	2.0	20	90	4	55	36	14	14	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
207381--207567	51	3.7	50	76	3	196	26	16	13	44	1.84
209529--209729	79	2.6	77	81	7	201	27	24	12	35	1.91
209736--210140	79	5.2	78	77	9	369	27	22	14	34	1.94
209736--210140	158	2.6	158	82	5	455	27	22	14	34	1.94
216219--217372	62	18.9	62	81	5	1177	25	23	18	31	1.97
216219--217383	123	9.5	123	80	6	1132	25	23	18	31	1.97
217388--217628	42	5.7	41	79	11	202	19	22	15	42	1.89
217390--217634	128	1.9	128	83	5	316	20	22	15	41	1.89
217633--217750	47	2.7	43	78	6	121	18	26	10	44	1.81
217636--217730	47	2.0	47	85	0	127	17	25	8	48	1.75
218379--218513	50	2.7	51	88	2	195	25	17	12	43	1.85
220815--221113	79	3.8	78	78	6	316	27	25	12	34	1.92
220815--220996	78	2.3	78	87	4	251	26	24	13	35	1.92
221102--221500	78	5.1	78	81	8	418	29	23	12	34	1.91
221118--221500	158	2.4	157	78	9	424	29	22	12	35	1.91
224991--225040	20	2.5	20	96	0	91	40	16	10	34	1.81
226052--226090	20	1.9	21	89	5	62	33	0	0	66	0.92
226451--226497	13	3.7	13	82	2	60	48	0	0	51	1.00
226856--226913	15	3.7	15	78	17	64	31	0	0	68	0.89
226856--226902	13	3.4	14	80	13	62	31	0	0	68	0.90
226919--226951	6	5.5	6	86	13	50	66	0	0	33	0.92
226915--226970	24	2.3	25	75	9	62	58	1	1	37	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226976--227051	5	15.2	5	70	15	50	36	2	0	60	1.11
226964--227053	11	8.9	11	72	17	54	38	2	0	58	1.10
227523--227566	17	2.5	17	82	13	54	43	0	2	54	1.12
231415--231472	21	2.8	21	94	0	98	36	10	15	37	1.82
231527--231594	19	3.9	19	74	21	76	36	11	13	38	1.81
231529--231591	32	2.0	32	93	0	108	36	12	14	36	1.84
234156--234378	52	4.3	52	79	6	202	29	23	12	34	1.91
234366--234465	28	3.6	29	82	11	111	22	33	20	25	1.97
235862--235936	20	3.8	19	78	7	87	41	12	13	33	1.81
235859--235936	40	2.0	39	89	2	120	41	12	12	33	1.82
236520--237942	28	49.2	28	78	9	644	23	17	30	28	1.97
236520--237942	56	24.6	56	79	10	799	23	17	30	28	1.97
236744--237007	32	8.3	32	87	1	370	18	18	30	32	1.95
237405--237493	45	1.9	46	88	8	137	21	15	32	30	1.94
237661--237951	83	3.5	83	88	3	426	27	15	32	24	1.95
237661--237951	55	5.3	56	89	2	428	27	15	32	24	1.95
238994--239027	12	2.8	13	86	13	54	0	0	14	85	0.60
238997--239036	11	3.6	11	90	6	55	0	2	7	90	0.55
239311--239356	23	2.0	24	91	4	76	4	13	13	69	1.33
239298--239351	14	4.3	13	71	23	53	5	14	12	66	1.41
239304--239362	23	2.5	23	79	17	68	6	13	11	67	1.40
246395--246469	20	3.8	19	77	7	78	40	13	13	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
246392--246469	40	2.0	39	87	2	111	39	14	12	33	1.84

Tables:   1   2

The End!