genome.fa.s387.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold387
Parameters: 2 7 7 80 10 50 1000
Length:  397658

Tables:   1   2   

This is table  2  of  2  ( 213 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123457--123500	21	2.1	21	83	8	54	25	31	4	38	1.76
126079--126104	13	2.0	13	100	0	52	30	15	15	38	1.88
126802--126846	21	2.1	21	84	8	56	24	31	4	40	1.75
130650--130680	15	2.1	15	93	0	53	12	22	16	48	1.80
132467--132511	21	2.1	21	84	8	56	22	20	4	53	1.63
134730--134755	13	2.0	13	100	0	52	30	15	15	38	1.88
141913--141968	20	2.8	19	89	5	76	39	14	16	30	1.88
142027--142052	13	2.0	13	100	0	52	38	15	15	30	1.88
142511--142577	37	1.9	35	88	11	102	32	11	25	29	1.92
147478--147503	13	2.0	13	100	0	52	38	15	15	30	1.88
147962--148028	37	1.9	35	88	11	102	32	11	25	29	1.92
150099--150129	15	2.1	15	93	0	53	48	16	22	12	1.80
274813--274940	51	2.4	52	79	10	143	31	9	24	35	1.87
277300--277325	13	2.0	13	100	0	52	38	15	15	30	1.88
277279--277345	33	2.0	33	88	0	98	43	16	14	25	1.86
277365--277432	19	3.9	18	76	23	83	38	14	11	35	1.83
277387--277411	13	1.9	13	100	0	50	32	16	16	36	1.90
277368--277430	32	2.0	32	96	0	117	36	15	12	34	1.86
277488--277544	21	2.7	21	94	0	96	40	17	10	31	1.84
281517--281559	23	1.9	22	90	4	68	34	16	11	37	1.85
281791--281845	25	2.3	23	81	12	65	27	7	5	60	1.46
284992--285017	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285056--285131	21	3.7	21	82	3	109	28	18	11	40	1.86
285076--285149	20	3.7	20	81	3	103	31	20	13	35	1.91
285056--285149	41	2.3	41	100	0	188	29	19	12	38	1.89
292068--292263	97	2.0	97	97	0	374	23	16	19	40	1.91
293130--293163	16	2.1	16	94	0	59	50	23	0	26	1.50
297890--297931	18	2.3	18	83	0	57	52	4	4	38	1.44
304225--304289	33	2.0	33	87	6	96	35	18	10	35	1.86
304319--304374	19	2.9	19	89	2	76	37	17	14	30	1.90
312397--312436	20	2.0	20	90	0	62	37	20	12	30	1.89
312467--312491	13	1.9	13	100	0	50	32	16	16	36	1.90
312479--312531	20	2.6	21	84	3	72	39	15	16	28	1.89
312584--312609	13	2.0	13	100	0	52	30	15	15	38	1.88
312564--312631	33	2.1	32	89	8	102	35	16	14	33	1.89
314304--314366	33	1.9	33	90	6	101	38	19	9	33	1.84
314396--314451	19	2.9	18	84	10	67	35	17	14	32	1.90
315271--315308	15	2.6	15	87	4	51	36	18	0	44	1.50
315349--315385	15	2.3	17	86	9	51	70	0	13	16	1.17
317742--317816	15	5.2	14	72	19	57	74	0	24	1	0.89
317754--317796	6	6.9	7	78	21	51	76	0	23	0	0.78
317744--317837	29	3.3	27	78	16	100	73	0	24	2	0.94
317742--317831	11	9.1	10	77	18	66	73	0	24	2	0.95
318150--318199	3	17.0	3	95	4	93	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320361--320393	7	4.6	7	96	3	57	84	0	0	15	0.61
320933--320967	12	2.9	12	86	0	52	60	31	5	2	1.35
320936--321022	18	4.6	19	71	9	54	56	29	9	4	1.51
320954--321029	27	2.9	25	77	12	73	53	28	11	5	1.59
329888--329914	13	2.1	13	100	0	54	22	18	14	44	1.86
329903--329957	19	2.8	19	81	10	67	32	16	14	36	1.89
338766--338822	19	2.9	19	90	10	89	33	17	15	33	1.92
338851--338915	33	2.0	33	87	0	94	40	15	13	30	1.86
344799--345275	156	3.1	154	78	7	468	37	20	16	26	1.93
344829--345293	155	3.0	154	80	5	501	37	20	16	26	1.93
347228--347532	163	1.9	163	80	4	355	49	7	11	30	1.67
347427--347468	19	2.0	21	82	13	52	66	0	16	16	1.25
349033--349122	30	3.0	30	95	0	153	30	21	7	41	1.81
349446--349512	33	2.0	33	88	5	100	26	13	31	28	1.94
350826--350874	21	2.4	21	83	10	57	48	0	20	30	1.50
350993--351032	13	3.1	13	92	0	71	37	15	15	32	1.88
356772--356826	19	2.8	19	86	2	65	38	12	16	32	1.86
356792--356854	32	1.9	33	87	9	94	41	12	15	30	1.85
359639--359664	13	2.0	13	100	0	52	30	15	15	38	1.88
359724--359778	20	2.7	19	83	8	65	27	14	16	41	1.87
359798--359836	20	2.0	19	95	5	69	30	10	23	35	1.88
360361--360391	16	1.9	16	100	0	62	38	12	6	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362056--362097	22	2.0	21	86	13	61	40	0	21	38	1.53
364814--364838	13	1.9	13	100	0	50	88	0	0	12	0.53
364815--364860	19	2.3	20	78	14	51	80	0	2	17	0.81
364967--365061	19	5.6	19	71	27	97	31	12	20	35	1.90
364965--365065	32	3.2	32	97	0	184	32	11	19	35	1.89
364990--365042	13	3.6	13	73	26	52	32	15	20	32	1.93
365114--365139	13	2.0	13	100	0	52	30	15	15	38	1.88
367504--367627	52	2.4	52	86	5	171	29	26	12	31	1.92
367645--367844	79	2.5	79	82	1	231	25	29	15	30	1.95
372550--372575	13	2.0	13	100	0	52	30	15	15	38	1.88
372709--372747	20	2.0	19	95	5	69	30	10	23	35	1.88
373119--373317	87	2.3	87	83	5	240	39	8	20	31	1.83
374664--374730	31	2.2	31	91	2	109	41	17	16	23	1.89
378668--378816	52	2.9	51	87	4	217	31	16	18	33	1.93
378870--378936	33	2.0	33	88	0	98	40	14	11	32	1.83
378892--378916	13	1.9	13	100	0	50	32	16	16	36	1.90
381047--381104	19	3.0	19	84	2	80	31	15	17	36	1.91
382497--382534	3	12.7	3	83	10	51	39	0	34	26	1.57
386997--387034	20	1.9	20	100	0	76	39	10	18	31	1.85
387048--387145	20	5.6	20	61	30	62	30	17	9	42	1.80
387048--387159	33	3.4	33	97	0	215	31	16	9	41	1.81
387267--387306	21	1.9	21	84	0	53	25	20	0	55	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389109--389165	19	2.9	19	81	2	69	33	14	15	36	1.88
389195--389259	33	2.0	33	81	6	78	35	13	16	33	1.89
390076--390339	97	2.7	97	85	1	350	41	11	20	27	1.86
392816--392862	20	2.3	20	92	3	76	29	14	10	44	1.79
395866--395903	15	2.4	16	95	4	69	26	13	10	50	1.73

Tables:   1   2

The End!