genome.fa.s390.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold390
Parameters: 2 7 7 80 10 50 1000
Length:  272427

Tables:   1   2   

This is table  1  of  2  ( 234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2414--2474	20	3.4	18	81	16	74	62	0	0	37	0.96
2407--2462	12	4.8	12	75	16	55	66	0	0	33	0.92
2455--2503	22	2.2	23	85	3	64	61	0	0	38	0.96
2470--2513	14	3.1	14	83	12	54	61	0	0	38	0.96
4453--4493	21	2.0	21	85	9	57	46	0	0	53	1.00
6271--6377	46	2.3	46	79	6	117	38	3	10	47	1.55
7274--7304	15	2.1	15	93	0	53	35	6	25	32	1.82
7816--7863	25	1.9	25	82	0	60	64	6	0	29	1.18
9420--9459	21	1.9	21	85	10	55	32	5	5	57	1.42
9426--9483	20	2.9	19	84	5	62	36	3	5	55	1.39
9805--9835	16	1.9	16	100	0	62	48	0	0	51	1.00
9889--9981	48	2.1	47	82	15	117	47	2	2	48	1.26
9990--10034	8	5.8	8	82	12	58	53	2	0	44	1.13
9990--10050	8	8.0	7	77	13	50	57	1	0	40	1.08
10007--10062	15	3.5	15	82	7	58	60	0	0	39	0.97
10909--10963	28	1.9	29	82	17	71	52	5	0	41	1.24
11025--11087	32	2.0	30	87	6	90	49	6	0	44	1.28
20057--20107	21	2.4	21	75	18	52	41	0	0	58	0.98
20266--20320	4	13.5	4	81	14	60	76	0	23	0	0.79
20327--20384	29	1.9	30	82	10	73	34	0	5	60	1.19
21377--21464	14	6.3	14	69	18	58	40	2	1	55	1.20
21685--21714	12	2.4	13	94	5	53	30	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23059--23109	19	2.8	18	82	5	66	43	1	0	54	1.11
23661--23692	2	16.0	2	100	0	64	0	50	0	50	1.00
23702--23750	10	5.0	10	76	14	57	55	0	0	44	0.99
25586--25626	16	2.5	17	88	7	59	36	0	4	58	1.20
30192--30241	20	2.5	21	73	26	54	54	0	0	46	1.00
31631--31739	56	1.9	57	81	9	134	35	0	3	59	1.21
31661--31812	33	4.7	32	70	23	113	39	0	0	59	1.02
31661--31856	33	6.5	31	71	22	100	38	0	0	60	1.01
31708--31813	17	6.3	17	71	17	62	38	0	0	60	1.03
31653--31823	62	2.7	61	73	19	145	39	0	0	60	1.01
31663--31831	34	5.2	33	66	19	95	38	0	0	60	1.01
31661--31850	72	2.5	77	78	13	216	38	0	0	61	1.00
32654--32678	9	2.8	9	100	0	50	56	0	0	44	0.99
33081--33112	2	15.5	2	93	6	55	46	0	3	50	1.17
33925--33968	19	2.4	19	85	14	65	59	0	0	40	0.98
33925--33975	19	2.7	19	82	11	61	56	0	0	43	0.99
34414--34464	26	2.1	26	85	10	72	56	0	3	39	1.18
34618--34659	3	14.3	3	90	5	59	64	4	0	30	1.14
35212--35245	16	2.1	16	89	10	52	58	0	0	41	0.98
36517--36696	22	8.2	21	67	15	89	40	0	0	59	0.97
36539--36688	35	4.3	35	71	17	107	41	0	0	58	0.98
36558--36635	27	3.0	27	75	19	85	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36555--36657	25	4.0	24	74	20	66	37	0	0	62	0.96
36571--36696	46	2.8	46	80	11	127	38	0	0	61	0.96
36619--36718	44	2.3	43	78	11	105	36	1	1	62	1.09
37191--37228	3	12.7	3	100	0	76	34	0	0	65	0.93
40079--40111	13	2.5	14	90	9	52	57	0	0	42	0.98
41646--41670	11	2.3	11	100	0	50	24	8	8	60	1.52
41784--41825	22	1.9	22	90	9	68	38	0	0	61	0.96
42854--42891	2	19.5	2	86	5	51	42	0	2	55	1.14
48101--48202	16	6.8	16	69	17	69	55	0	0	42	1.13
58697--58732	2	18.0	2	100	0	72	50	0	0	50	1.00
58919--58970	26	2.0	26	100	0	104	30	19	11	38	1.87
59700--59736	16	2.4	16	90	4	58	37	0	8	54	1.30
59776--59808	16	2.1	16	88	11	50	54	0	0	45	0.99
60394--60440	20	2.3	20	88	0	67	36	0	2	61	1.08
60678--60737	26	2.3	27	80	5	70	50	3	1	45	1.28
60965--61010	23	2.0	24	87	12	69	54	8	4	32	1.51
61607--61720	12	10.0	11	68	13	52	66	2	3	27	1.21
61611--61668	23	2.6	23	88	2	82	70	3	3	22	1.17
61607--61671	23	3.0	22	75	20	66	70	3	3	23	1.15
61641--61686	17	2.8	17	75	15	51	71	0	4	23	1.03
62874--63131	129	2.0	129	83	4	324	31	8	23	36	1.86
66936--66974	18	2.1	19	85	4	53	46	0	2	51	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67605--67650	17	2.6	17	82	3	56	28	8	4	58	1.47
67641--67683	22	2.0	21	90	4	68	30	9	2	58	1.42
68928--68975	24	2.0	23	84	11	62	52	4	0	43	1.20
70011--70046	11	3.2	11	92	4	54	50	5	0	44	1.25
70339--70394	15	3.7	15	71	17	53	35	8	0	55	1.31
70305--70397	30	3.2	30	76	15	106	33	8	0	58	1.29
71485--71541	23	2.5	23	82	2	71	36	10	10	42	1.74
72261--72305	20	2.2	21	88	4	65	35	4	2	57	1.31
73110--73152	21	2.1	20	91	4	68	62	0	0	37	0.95
76236--76272	12	3.2	12	82	17	51	48	2	0	48	1.15
77684--77728	17	2.4	19	89	10	67	46	0	0	53	1.00
77911--77972	18	3.3	19	82	10	65	66	1	0	32	1.02
77937--77986	18	2.6	20	84	6	59	62	2	0	36	1.07
77948--78008	28	2.1	30	82	14	76	57	0	0	42	0.98
78295--78323	14	2.1	14	93	6	51	68	0	0	31	0.89
81366--81456	27	3.4	27	79	8	98	42	0	0	57	0.99
81391--81478	9	9.8	9	74	15	67	37	1	1	60	1.12
81381--81478	27	3.6	26	76	18	85	39	1	1	58	1.12
84500--84529	2	15.0	2	92	0	51	53	0	0	46	1.00
84614--84638	11	2.3	11	100	0	50	56	0	0	44	0.99
84861--84894	16	2.1	16	100	0	68	29	0	0	70	0.87
84870--84910	20	2.0	20	86	9	57	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84865--84957	16	6.4	15	73	18	56	37	0	3	59	1.14
85085--85123	19	2.1	19	85	0	51	56	5	0	38	1.22
85490--85662	38	4.6	37	74	14	124	52	1	2	43	1.23
85521--85586	18	3.7	18	76	10	64	56	1	0	42	1.08
85524--85659	35	3.9	35	74	10	100	51	1	2	44	1.22
86267--86293	2	13.5	2	100	0	54	51	0	0	48	1.00
87033--87105	3	24.7	3	92	2	76	57	1	0	41	1.07
90204--90235	2	16.0	2	100	0	64	50	0	50	0	1.00
95415--95454	12	3.5	12	80	13	57	60	0	0	40	0.97
95415--95455	18	2.3	18	91	0	64	58	0	0	41	0.98
109405--109455	2	25.5	2	91	0	84	47	49	0	3	1.20
110330--110382	21	2.7	19	83	11	63	30	0	3	66	1.10
110573--110619	16	2.8	16	87	6	58	42	0	0	57	0.98
111105--111134	14	2.1	14	87	0	51	40	6	0	53	1.27
115033--115082	25	2.0	26	88	4	75	42	8	6	44	1.58
115773--115806	17	1.9	18	88	5	52	50	5	8	35	1.58
117325--117406	2	41.0	2	92	0	74	39	1	10	48	1.46
117325--117392	26	2.6	26	90	0	100	36	1	13	48	1.51
118671--118717	25	1.9	24	86	4	67	48	0	2	48	1.13
119878--119963	7	12.1	7	68	16	52	46	0	0	53	1.00
119885--119923	20	1.9	21	89	5	62	43	0	0	56	0.99
119878--119959	28	3.0	28	80	5	78	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120945--121003	19	2.7	22	80	20	70	52	0	0	47	1.00
120945--121003	12	5.3	12	70	29	51	52	0	0	47	1.00
121197--121249	27	2.0	26	85	7	72	64	3	1	30	1.22
121215--121243	12	2.3	13	94	5	51	68	3	0	27	1.05
121207--121249	15	3.1	15	77	19	56	67	4	2	25	1.22
122285--122323	19	2.1	18	86	13	53	56	0	0	43	0.99
122311--122353	22	2.0	22	86	9	61	46	2	0	51	1.13
122369--122413	15	2.9	15	83	6	54	60	2	0	37	1.09
122736--122807	34	2.1	36	81	5	85	55	2	0	41	1.14
123218--123252	2	18.0	2	94	5	63	48	0	0	51	1.00

Tables:   1   2