genome.fa.s390.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold390
Parameters: 2 7 7 80 10 50 1000
Length:  272427

Tables:   1   2   

This is table  2  of  2  ( 234 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124539--124606	16	4.1	16	73	19	50	48	2	1	47	1.26
126575--126625	22	2.2	23	82	6	59	29	5	1	62	1.29
127245--127297	21	2.5	22	81	9	65	69	1	3	24	1.15
128825--128885	31	2.0	31	93	0	104	34	8	4	52	1.53
129876--129908	17	2.0	17	88	5	50	30	9	0	60	1.27
130835--130859	2	12.5	2	100	0	50	48	0	0	52	1.00
134645--134678	3	11.3	3	100	0	68	67	0	0	32	0.91
136078--136115	16	2.2	18	86	9	53	63	0	0	36	0.95
136093--136174	32	2.4	34	80	8	96	56	2	0	41	1.13
137487--137522	14	2.6	13	87	12	54	55	0	0	44	0.99
137555--137579	12	2.1	12	100	0	50	40	16	0	44	1.47
137876--137910	18	1.9	18	88	0	52	45	0	0	54	0.99
137863--137922	21	2.9	20	76	16	59	46	0	0	53	1.00
137815--137921	38	2.8	36	71	25	87	46	0	0	52	1.06
138255--138293	16	2.5	16	87	4	53	53	5	5	35	1.45
138355--138387	15	2.2	15	94	0	57	51	6	6	36	1.51
139207--139274	16	4.2	17	77	20	74	57	0	0	42	0.98
139182--139264	33	2.5	32	88	3	112	55	2	1	40	1.21
139207--139285	32	2.5	33	85	8	101	56	0	0	43	0.99
139734--139765	11	2.9	11	90	0	55	68	0	0	31	0.90
139710--139764	27	2.0	27	83	13	69	67	0	0	32	0.91
139710--139763	29	1.9	27	85	7	72	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140634--140681	25	2.0	23	88	8	69	47	0	12	39	1.41
141664--141694	13	2.4	13	94	0	53	87	0	3	9	0.66
142405--142453	5	9.8	5	79	16	57	55	2	2	40	1.23
142956--142998	23	2.0	21	86	9	59	48	2	0	48	1.14
143602--143636	18	1.9	18	94	0	61	37	0	2	60	1.12
143831--143860	14	2.1	15	93	6	53	40	0	3	56	1.16
143839--143905	15	4.6	15	75	5	66	46	1	0	52	1.09
143832--143870	20	2.0	20	84	0	51	41	0	2	56	1.13
143862--143899	14	2.6	15	83	4	51	47	2	0	50	1.15
144177--144212	17	2.1	17	89	0	54	58	2	2	36	1.27
144487--144542	22	2.6	22	82	2	69	51	1	0	46	1.11
144928--144973	21	2.2	21	84	7	58	41	0	0	58	0.98
147892--147980	45	2.0	45	88	0	133	39	22	10	28	1.86
148393--148474	25	3.3	25	73	21	75	34	0	2	63	1.08
149098--149144	16	2.9	16	84	12	60	57	2	0	40	1.11
150143--150175	2	16.5	2	100	0	66	48	0	0	51	1.00
151660--151717	20	2.9	21	76	7	66	51	3	1	43	1.28
156516--156590	20	3.8	20	78	7	89	40	13	13	33	1.83
156513--156590	40	2.0	39	87	2	111	39	14	12	33	1.84
158549--158644	48	2.0	47	93	2	165	51	17	7	23	1.71
158646--158690	23	2.0	23	86	8	65	57	13	0	28	1.36
161375--161623	100	2.5	100	85	1	329	38	14	8	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
162302--162354	22	2.4	22	80	3	61	56	1	1	39	1.21
162292--162350	28	2.0	30	81	12	70	52	1	1	44	1.21
163201--163247	18	2.5	19	82	10	60	42	0	2	55	1.12
163201--163258	27	2.3	26	82	11	75	41	0	1	56	1.09
163591--163626	2	17.5	2	88	5	54	50	0	2	47	1.15
165308--165346	19	2.1	19	100	0	78	30	25	33	10	1.89
167162--167216	19	2.9	19	83	5	67	50	1	1	45	1.22
167778--167816	3	13.0	3	100	0	78	66	0	0	33	0.92
169171--169197	14	1.9	14	100	0	54	62	7	0	29	1.22
169276--169310	18	1.9	18	88	11	54	54	0	0	45	0.99
170097--170137	21	2.0	21	90	4	66	43	0	0	56	0.99
170449--170481	2	16.5	2	100	0	66	51	0	0	48	1.00
171105--171131	2	13.5	2	100	0	54	51	0	0	48	1.00
171190--171277	26	3.2	28	76	17	71	50	2	2	45	1.27
171535--171589	21	2.6	21	88	0	74	43	1	1	52	1.22
172564--172620	19	2.8	21	84	7	82	35	1	0	63	1.05
173173--173236	19	3.1	21	76	17	62	51	0	1	46	1.10
173196--173249	19	2.8	20	83	8	58	46	0	3	50	1.19
173394--173483	35	2.5	36	78	3	92	55	3	1	40	1.24
173645--173685	3	13.7	3	94	0	73	65	0	2	31	1.05
179450--179496	24	2.0	24	82	0	58	59	2	36	2	1.21
181684--181727	22	2.0	22	100	0	88	45	4	36	13	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182116--182183	27	2.5	28	80	7	77	45	0	1	52	1.09
182308--182407	49	2.0	49	100	0	200	26	8	13	53	1.66
186112--186146	16	2.1	18	89	10	56	45	0	0	54	0.99
186406--186472	19	3.5	19	69	15	50	65	4	1	28	1.21
187703--187752	24	2.0	25	85	11	68	30	0	4	66	1.10
188489--188558	22	3.1	22	74	11	70	61	4	0	34	1.16
188489--188558	24	3.1	22	75	15	63	61	4	0	34	1.16
190472--190530	12	4.8	12	77	10	66	84	1	13	0	0.69
196214--196239	2	13.0	2	100	0	52	50	0	0	50	1.00
196809--196849	9	4.2	10	79	14	50	60	0	0	39	0.96
196823--196847	12	2.1	12	100	0	50	68	0	0	32	0.90
196836--196878	17	2.4	18	81	14	54	48	0	0	51	1.00
197225--197284	22	2.7	22	82	7	59	45	1	0	53	1.10
198009--198056	24	1.9	25	83	8	62	18	10	4	66	1.37
198227--198269	21	2.0	21	91	8	70	58	0	0	41	0.98
198205--198307	46	2.3	45	78	10	111	53	0	0	46	1.00
199063--199110	25	1.9	25	86	0	69	47	0	2	50	1.12
200094--200120	13	2.1	13	100	0	54	29	0	7	62	1.22
201228--201260	15	2.2	15	94	0	57	42	0	3	54	1.15
201766--202032	129	2.1	130	84	5	362	19	22	15	42	1.89
209793--209968	58	3.0	57	85	3	226	30	31	20	17	1.96
209805--209987	58	3.2	58	83	1	188	31	31	19	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
213812--213851	10	4.2	10	93	6	66	42	0	0	57	0.98
213812--213851	19	2.1	19	90	9	64	42	0	0	57	0.98
217810--218068	129	2.0	129	93	0	437	25	24	23	26	2.00
220309--220347	17	2.2	18	86	13	55	64	5	20	10	1.44
224199--224236	6	6.5	6	93	3	60	89	0	10	0	0.49
225851--225903	20	2.7	20	82	11	72	41	0	0	58	0.98
228422--228511	44	2.0	44	100	0	180	33	13	15	37	1.86
230293--230320	13	2.2	13	100	0	56	42	17	0	39	1.50
232750--232783	15	2.2	16	89	5	52	14	5	2	76	1.09
234267--234301	16	2.2	16	90	5	54	20	5	14	60	1.54
234307--234338	14	2.2	15	94	5	57	28	6	9	56	1.55
235708--235809	27	3.8	27	92	2	161	21	9	23	45	1.82
235714--235828	27	4.4	24	84	11	72	24	10	21	43	1.84
238116--238189	27	2.7	27	87	0	103	25	10	17	45	1.81
241539--241570	5	6.6	5	92	7	57	78	0	0	21	0.76
245639--245676	12	2.9	13	84	11	51	42	0	7	50	1.31
245775--245807	2	16.5	2	100	0	66	48	0	0	51	1.00
251970--252017	24	2.0	24	91	0	78	33	10	25	31	1.89
253323--253357	2	17.5	2	100	0	70	48	0	0	51	1.00
255592--255633	2	21.5	2	95	4	77	47	0	0	52	1.00
255776--255810	2	17.5	2	100	0	70	48	0	0	51	1.00
256518--256565	24	2.0	24	87	0	69	35	12	22	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
258430--258477	24	2.0	24	87	0	69	37	10	20	31	1.87
260826--260866	2	20.5	2	89	0	64	46	2	2	48	1.28
262694--262757	16	4.0	16	84	8	85	56	6	0	37	1.25
262843--262871	2	14.5	2	100	0	58	48	0	0	51	1.00

Tables:   1   2

The End!